GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002392-TA|BGIBMGA002392-PA|undefined
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    32   0.050
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    25   5.8  
SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyc...    25   7.6  

>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 32.3 bits (70), Expect = 0.050
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 2   WRQWLPTEALQTFEIGGYYTIEQSHSKLRIIVLNSVLWAGGAARTDG 48
           W   +P E   TFE G YY  +    KL  I +N++  +   A  DG
Sbjct: 199 WDALIPYEERHTFEKGSYYLCDVIPDKLAAISINTLYLSNKNAAVDG 245


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 85  NPKGEIHWSIEYNLTQYYGLRE 106
           NPKG++H++IE      Y  +E
Sbjct: 69  NPKGDVHYTIEVETEDPYVTKE 90


>SPAC17G6.15c |||MTC tricarboxylate transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 28  KLRIIVLNSVLWAGGAARTDGPNVGRAQWEWLNQVLSTA 66
           ++   VL +++   G  + +    G   W+W+NQ ++ A
Sbjct: 88  RMSCFVLTNLVVTAGMLQPNLGTAGTVFWQWMNQSVNVA 126


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 892,125
Number of Sequences: 5004
Number of extensions: 32923
Number of successful extensions: 70
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 3
length of query: 199
length of database: 2,362,478
effective HSP length: 69
effective length of query: 130
effective length of database: 2,017,202
effective search space: 262236260
effective search space used: 262236260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)