GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002392-TA|BGIBMGA002392-PA|undefined
         (199 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621...    29   1.9  
05_06_0132 + 25893241-25893435,25894266-25894487,25894567-258948...    28   5.9  
01_05_0437 + 22140866-22141189                                         27   7.8  

>08_01_0703 +
           6212409-6212456,6212661-6212742,6214031-6214106,
           6214498-6214594,6214760-6214862,6214973-6215103,
           6215285-6215462,6215528-6215715,6215945-6216154,
           6216231-6216578,6216660-6216786,6217304-6217455
          Length = 579

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 101 YYGLREINAASLHALAEKIRSHHDRSVFNKYLTALRVRH--STDTSDCDASCAHVHYCAV 158
           +YG + ++  +   +A  I+ H     +N YL A    +  S   S       H + C V
Sbjct: 278 FYGDKSLSVVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFESPTCVVVKHTNPCGV 337

Query: 159 -TRADYSE-FRSCVR-NPASALASRAAQNTT 186
            +R D  E +R  V+ +P SA     A NTT
Sbjct: 338 ASRQDILEAYRLAVKGDPVSAFGGIVAFNTT 368


>05_06_0132 +
           25893241-25893435,25894266-25894487,25894567-25894863,
           25894944-25895111,25895201-25895368,25895456-25895536,
           25895704-25895770,25895874-25895971,25896587-25896659,
           25896753-25896823,25896919-25896968,25897698-25897810,
           25898182-25898300,25898629-25898721,25899025-25899051,
           25899422-25899823,25900467-25900513,25900612-25900651,
           25900733-25900795,25900881-25901018,25901873-25902031,
           25902111-25902164,25902324-25902392,25902514-25902643,
           25902909-25902949,25903133-25903178,25903200-25903357,
           25903560-25903605,25903702-25903853,25904022-25904243
          Length = 1202

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 8   TEALQTFEIGGYYTIEQSHSKLRIIVLNSVLWAGGAARTDGPNVGRAQWEWL 59
           T     FE+ G +   Q  + + + VL  ++  GG+  T GP  G   W +L
Sbjct: 352 THIALAFEVPGGW--RQEKTAMIVTVLQVLMGGGGSFSTGGPGKGMHSWLYL 401


>01_05_0437 + 22140866-22141189
          Length = 107

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 38 LWAGGAARTDGPNVGRAQWEWL 59
          LW  G    DG +  R +W W+
Sbjct: 18 LWKDGGGEEDGHDCSREEWSWM 39


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,708,344
Number of Sequences: 37544
Number of extensions: 210092
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 490
Number of HSP's gapped (non-prelim): 3
length of query: 199
length of database: 14,793,348
effective HSP length: 78
effective length of query: 121
effective length of database: 11,864,916
effective search space: 1435654836
effective search space used: 1435654836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)