GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002392-TA|BGIBMGA002392-PA|undefined
         (199 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30321| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_48070| Best HMM Match : Metallophos (HMM E-Value=8.5)               36   0.030
SB_32285| Best HMM Match : Metallophos (HMM E-Value=2.4e-07)           35   0.052
SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)           31   0.64 
SB_41188| Best HMM Match : BacA (HMM E-Value=0.18)                     31   0.64 
SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)                 28   4.5  
SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   6.0  
SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)                  28   6.0  
SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)                   28   6.0  
SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)                 28   6.0  
SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_107| Best HMM Match : Transposase_28 (HMM E-Value=0.55)             27   7.9  

>SB_30321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 9   EALQTFEIGGYYTIEQSHSKLRIIVLNSVLWAGGAART--DGPNVGRAQWEWLNQVLSTA 66
           E   TF  GGYY +  +  ++ +++LNS+ W   A     +   + + Q +WL Q L  A
Sbjct: 251 ELKTTFLDGGYYKVHIADGRMILLILNSMYWNPYAVEKSYNVQVIAKRQLDWLEQQLEFA 310

Query: 67  RKKSEMV 73
           +K+S+ V
Sbjct: 311 KKESKKV 317



 Score = 33.5 bits (73), Expect = 0.12
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 68  KKSEMVLDYTQYYLDV--TNPKGEIHWSIEYNLTQYY--GLREINAASLHALAEKIRSHH 123
           +K   +LDY Q++LD+         +W ++Y  +++Y    + IN   +  L + + +  
Sbjct: 413 RKELAILDYDQHFLDIVMATEFNAPNWQLDYRFSEHYPSANKYINTDRILELNQNLINQS 472

Query: 124 DRSVFNKYLTALRVRHSTDTSDCDASCAHVHYCAVTRADYSEFRSCVRNPAS-ALASRAA 182
             + +  Y+ +  VR+   +           YCA+     SE+  C    A+ ++A  AA
Sbjct: 473 HENAWATYVFSRAVRYQASSYS-----RFGLYCAMRHVIKSEYDKCSAAQATISIAKMAA 527

Query: 183 QNT 185
             T
Sbjct: 528 AVT 530


>SB_48070| Best HMM Match : Metallophos (HMM E-Value=8.5)
          Length = 383

 Score = 35.5 bits (78), Expect = 0.030
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 70  SEMVLDYTQYYLDVTNP-KGEIHWSIEYNLTQYYGLREINAASLHAL 115
           S +VL++  Y LD+    KGE+ W++EYN    Y +  +  ++ H L
Sbjct: 262 SRVVLNHETYILDLIEANKGEVQWTLEYNAKDAYKMPSLLPSAWHDL 308


>SB_32285| Best HMM Match : Metallophos (HMM E-Value=2.4e-07)
          Length = 562

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 9   EALQTFEIGGYYTIEQSHSKLRIIVLNSVLW---AGGAARTDGPNV---GRAQWEWLNQV 62
           E  +TF  GGYY ++ +  ++ ++ LNS+ W   A   + +D   +      Q+ WL   
Sbjct: 289 ELRETFVNGGYYKVDIAGGRMVLLALNSMYWYVDAHSDSESDSTYIQTKAAQQFNWLEGQ 348

Query: 63  LSTARKKSEMVL 74
           L  A+++ + V+
Sbjct: 349 LEQAKQQGKKVI 360



 Score = 33.1 bits (72), Expect = 0.16
 Identities = 20/102 (19%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 72  MVLDYTQYYLDV--TNPKGEIHWSIEYNLTQYY--GLREINAASLHALAEKIRSHHDRSV 127
           ++LDY QY++D+          W ++Y  ++ Y     +I+A  L+ L + + +   +  
Sbjct: 457 VLLDYDQYFMDIVMATQFQSAQWQLDYRFSERYPSTSEQIDATRLNELNQNLLNQTSKEA 516

Query: 128 FNKYLTALRVRHSTDTSDCDASCAHVHYCAVTRADYSEFRSC 169
           + +Y     V + T +           YC +   + +E+ +C
Sbjct: 517 WVRYAFGRAVNYQTSSYS-----RFNLYCCMRFVEKAEYEAC 553


>SB_57147| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1259

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 87  KGEIHWSIEYNLTQYYGLRE--INAASLHALAEKIRSHHDRSV 127
           K  IH S++  LT     ++    ++SLHALAEK++   DRSV
Sbjct: 482 KNVIHHSVKDILTAVNSAQDGLTGSSSLHALAEKVQLSDDRSV 524


>SB_44613| Best HMM Match : Glyco_hydro_53 (HMM E-Value=0.79)
          Length = 696

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 87  KGEIHWSIEYNLTQYYGLRE--INAASLHALAEKIRSHHDRSV 127
           K  IH S++  LT     ++    ++SLHALAEK++   DRSV
Sbjct: 492 KNVIHHSVKDILTAVNSAQDGLTGSSSLHALAEKVQLSDDRSV 534


>SB_41188| Best HMM Match : BacA (HMM E-Value=0.18)
          Length = 405

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 87  KGEIHWSIEYNLTQYYGLRE--INAASLHALAEKIRSHHDRSV 127
           K  IH S++  LT     ++    ++SLHALAEK++   DRSV
Sbjct: 56  KNVIHHSVKDILTAVNSAQDGLTGSSSLHALAEKVQLSDDRSV 98


>SB_59672| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 4/71 (5%)

Query: 75  DYTQYYLDVTNPKGEIHWSIEYNLTQYYGLREINAASLHALAEKIRSHHDRSVFNKYLTA 134
           D+T   + +T P   +H+      TQ+Y    I   + H     +   H R     Y T 
Sbjct: 58  DHTHDTITLTTPAHTLHYHTHVATTQHY---NITLTTRHYTITLMTRSHSRHQHTYYTTT 114

Query: 135 LRVR-HSTDTS 144
           L VR H+T  S
Sbjct: 115 LTVRPHNTTRS 125


>SB_53393| Best HMM Match : RVT_1 (HMM E-Value=5.8e-30)
          Length = 1246

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 117 EKIRSHHDRSVFNKYLTALRVRHSTDTSDCDASCAHVH-YC 156
           E++  H +  + +   T LR++   +  DCDA C  V  YC
Sbjct: 843 EELEKHSESVLESLPATELRLKDIQEAQDCDAICKQVKTYC 883


>SB_48164| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1883

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 98  LTQYYGLREINAASLHALAEKIRSHHDRSVFNKYLTALRVRHSTDTSDCDASCAHVHYCA 157
           LT Y    +IN+ S+HA   + +    R    K   +LR   S DT+  + S A     +
Sbjct: 472 LTAYEIQEKINSLSIHAKESRTQKRRRRREKAKLYASLRAL-SNDTTPANGSKADNTQAS 530

Query: 158 VTRAD 162
           VT  D
Sbjct: 531 VTEID 535


>SB_33530| Best HMM Match : DUF1168 (HMM E-Value=0.19)
          Length = 1026

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)

Query: 98  LTQYYGLREINAASLHALAEKIRSHHDRSVFNKYLTALRVRHSTDTSDCDASCAHVHYCA 157
           LT Y    +IN+ S+HA   + +    R    K   +LR   S DT+  + S A     +
Sbjct: 469 LTAYEIQEKINSLSIHAKESRTQKRRRRREKAKLYASLRAL-SNDTTPANGSKADNTQAS 527

Query: 158 VTRAD 162
           VT  D
Sbjct: 528 VTEID 532


>SB_32880| Best HMM Match : rve (HMM E-Value=3.4e-05)
          Length = 1264

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 52   GRAQWEWLNQVLSTARKKSEMVLDYTQYYLDVTNPKGEIHWSIEYNLTQYY 102
            GR  W+  ++   +  K++    DY     + T PK  + W     L+ YY
Sbjct: 1014 GRLDWQAQSRERGSLAKQNFTDTDYALKLYNQTRPKQSLEWMRAPELSDYY 1064


>SB_13182| Best HMM Match : Pox_A32 (HMM E-Value=0.033)
          Length = 745

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/51 (25%), Positives = 22/51 (43%)

Query: 52  GRAQWEWLNQVLSTARKKSEMVLDYTQYYLDVTNPKGEIHWSIEYNLTQYY 102
           GR  W+  ++   +  K++    DY     + T PK  + W     L+ YY
Sbjct: 666 GRLDWQAQSRERGSLAKQNFTDTDYALKLYNQTRPKQSLEWMRAPELSDYY 716


>SB_4799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1098

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 109 AASLHALAEKIRSHHDRSVFNKYLTALRVRHSTDTSDCDASCAHVHYCA 157
           A +L  L+ KIR    R  F+ Y T       TDT    +S AH + CA
Sbjct: 532 AHALRGLSTKIRVPTKR--FHFYTTRPHENAETDTKTITSSTAHAYSCA 578


>SB_107| Best HMM Match : Transposase_28 (HMM E-Value=0.55)
          Length = 320

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 50  NVGRAQWEWLNQVLSTARKKSEMVLD--YTQYYLDVTNPKGEIHWSIEYN 97
           N+ RA   W ++ L T   K E+V +  + +YYLD+++ K   + +I  N
Sbjct: 54  NLLRANKLWRHK-LKTEMVKDELVFEEKHERYYLDISSTKDRTYLTINSN 102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,591,521
Number of Sequences: 59808
Number of extensions: 244834
Number of successful extensions: 519
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 508
Number of HSP's gapped (non-prelim): 16
length of query: 199
length of database: 16,821,457
effective HSP length: 79
effective length of query: 120
effective length of database: 12,096,625
effective search space: 1451595000
effective search space used: 1451595000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)