GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002392-TA|BGIBMGA002392-PA|undefined
         (199 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.5  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    22   4.5  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    22   4.5  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    22   4.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 81   LDVTNPKGEIHWSI 94
            LDV  PKG + W I
Sbjct: 1009 LDVNTPKGNMQWKI 1022


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2
          protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 32 IVLNSVLWAGGAARTDGPN-VGR 53
          I+    LW G   ++ GPN +GR
Sbjct: 29 IIYPGTLWCGHGNKSSGPNELGR 51


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
          protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 32 IVLNSVLWAGGAARTDGPN-VGR 53
          I+    LW G   ++ GPN +GR
Sbjct: 34 IIYPGTLWCGHGNKSSGPNELGR 56


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
          protein.
          Length = 167

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)

Query: 32 IVLNSVLWAGGAARTDGPN-VGR 53
          I+    LW G   ++ GPN +GR
Sbjct: 34 IIYPGTLWCGHGNKSSGPNELGR 56


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.130    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,408
Number of Sequences: 429
Number of extensions: 2154
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 199
length of database: 140,377
effective HSP length: 55
effective length of query: 144
effective length of database: 116,782
effective search space: 16816608
effective search space used: 16816608
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)