GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002391-TA|BGIBMGA002391-PA|undefined
         (94 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.06 |vps25||ESCRT II complex subunit Vps25|Schizosaccharo...    26   1.1  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   2.5  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    24   3.3  
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    24   4.4  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    23   5.8  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    23   7.7  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.7  
SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    23   7.7  

>SPBC4B4.06 |vps25||ESCRT II complex subunit
          Vps25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 175

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 57 RENRTIFNTPNPRLMNVSLLRESKLLHSQMP 87
          RENR    T NP L+  SLL  S  +H  +P
Sbjct: 38 RENRQTSITINPELLESSLLHNS-TIHRTLP 67


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 2/75 (2%)

Query: 18  PVDESTRTVDPAMIGVLVGMALMFVIICVVLRLFSRARWRENRTIFNTPNPRLMNVSLLR 77
           P D+  R V PA + VL          C V RL S   W+ N  +      R +  +   
Sbjct: 112 PFDKQKRVVVPAALRVL--RLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFY 169

Query: 78  ESKLLHSQMPSEAGE 92
           ++KL   +  + A E
Sbjct: 170 QAKLAKQKKIASAKE 184


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 24.2 bits (50), Expect = 3.3
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 5   VTVDGAVICTPVKPVDESTRTVDPAMIGVLVGM--ALMFVIICVVLRLFSRARWRENRTI 62
           V+VD  VIC P+  ++    T +P +    +       F  +  V+ +F    W  N +I
Sbjct: 561 VSVDKVVICIPMDKLNTHLITFEPPLEEKKLKAIDRCHFTNVKKVILIFKTQFWEPNISI 620

Query: 63  FNT 65
           F +
Sbjct: 621 FGS 623


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 9/43 (20%), Positives = 22/43 (51%)

Query: 2   VPLVTVDGAVICTPVKPVDESTRTVDPAMIGVLVGMALMFVII 44
           V + T +G  +  P++      + +   + GV+  ++L+F+ I
Sbjct: 463 VAIFTYEGICLILPIQEQMAKPKNLPKLLTGVMAAISLLFISI 505


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 348

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 55 RWRENRTIFNTPNPRLMNVSLLRESKLL 82
          RWRE   I    +PRL++  L R   LL
Sbjct: 64 RWRERFVINGIHSPRLLSALLKRPFFLL 91


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 52  SRARWRENRTIFNTPNPRLMNVSLLRESKLLHSQM 86
           S + W    ++ N P    +NV  L ES LL + +
Sbjct: 375 SSSLWLTKSSLINPPYYAKINVETLNESVLLENNV 409


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 7/22 (31%), Positives = 15/22 (68%)

Query: 30  MIGVLVGMALMFVIICVVLRLF 51
           ++GV+VG   +  I+ V+ R++
Sbjct: 171 LVGVVVGSVFLLAIVMVIARIW 192


>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 23.0 bits (47), Expect = 7.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 30  MIGVLVGMALMFVIICVV 47
           +I   VG  L+FV+ICV+
Sbjct: 338 VIRARVGWGLVFVLICVI 355


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,644
Number of Sequences: 5004
Number of extensions: 13147
Number of successful extensions: 39
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 9
length of query: 94
length of database: 2,362,478
effective HSP length: 62
effective length of query: 32
effective length of database: 2,052,230
effective search space: 65671360
effective search space used: 65671360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 47 (23.0 bits)