Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002391-TA|BGIBMGA002391-PA|undefined
(94 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701... 29 0.69
01_06_0854 - 32477994-32478161,32478689-32478826,32479225-324794... 28 1.2
04_04_1138 - 31162440-31163488,31163910-31164164,31164386-311645... 27 2.1
03_05_0197 + 21884415-21885332,21886130-21886750 27 2.1
08_01_0701 + 6200351-6200470,6200879-6201104,6201502-6201747,620... 27 2.8
02_05_0108 + 25903545-25904292,25904888-25904989,25905220-25905263 27 2.8
01_06_0538 + 30076103-30076153,30076716-30076967 27 2.8
09_06_0291 - 22066550-22067610,22067721-22067975,22068093-220682... 26 3.7
09_04_0032 - 13953323-13955269 26 3.7
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89... 25 6.4
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26... 25 8.5
09_06_0074 - 20693840-20694271 25 8.5
08_02_1370 + 26457276-26457482,26457600-26457721,26458240-264582... 25 8.5
>01_06_0853 -
32468690-32468857,32469398-32469535,32469930-32470145,
32470280-32470356,32470483-32470549,32471264-32471866,
32471971-32472258
Length = 518
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 9 GAVICTPVKPVDESTRTVDPAMIGVLVGMA 38
GA TP +PV S R V+ I V++G+A
Sbjct: 41 GAAAATPPEPVSPSARLVEDFFIVVVIGIA 70
>01_06_0854 -
32477994-32478161,32478689-32478826,32479225-32479440,
32479580-32479656,32481144-32481555,32482248-32482850,
32482954-32483229
Length = 629
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 9 GAVICTPVKPVDESTRTVDPAMIGVLVGMALMF---VIICVVLRLFSR-ARWRENR-TIF 63
GA TP +PV S R ++ I V++G+A V + F+R R+R + T
Sbjct: 37 GAAAATPPEPVSPSARLLEDFFIVVVIGIATPVNDPVARAGIAAQFARYPRFRSIQVTDE 96
Query: 64 NTPNPRLMNVSLLRESKLLHSQMPSEA 90
+ NPR + +L + +++ ++ +A
Sbjct: 97 DGGNPRWVRTTLNVDDHIIYPELDMDA 123
>04_04_1138 -
31162440-31163488,31163910-31164164,31164386-31164500,
31164523-31164579,31164580-31164632,31164721-31164981,
31165243-31165293,31165395-31165430,31165815-31166040,
31166082-31166132,31166346-31166465
Length = 757
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 51 FSRARWRENRTIFNTPNPRLMNV 73
F R REN IFN P+ L+NV
Sbjct: 729 FMRKICRENSVIFNVPHESLLNV 751
>03_05_0197 + 21884415-21885332,21886130-21886750
Length = 512
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 28 PAMIGVLVGMALMFVIICVVLRLFSRARW----RENRTIFNTPNP-------RLMNVSLL 76
P +IGV++ L+FV+ V ++ R+ W +E + + P P L +V L
Sbjct: 6 PLLIGVVLAFLLLFVL--VNIKNSCRSWWPPPEKEKKKLRLPPGPWQLPLVGSLHHVLLS 63
Query: 77 RESKLLHSQMPSEAGEYG 94
R + L H + AG+YG
Sbjct: 64 RHADLPHRALRELAGKYG 81
>08_01_0701 +
6200351-6200470,6200879-6201104,6201502-6201747,
6201818-6201868,6202231-6202491,6202587-6202639,
6202705-6202819,6202985-6203239,6203773-6204827
Length = 793
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 51 FSRARWRENRTIFNTPNPRLMNV 73
F R REN IFN P+ L+NV
Sbjct: 765 FLRKICRENSVIFNVPHESLLNV 787
>02_05_0108 + 25903545-25904292,25904888-25904989,25905220-25905263
Length = 297
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 20 DESTRTVDPAMIGVLVGMALMFVIICVVLRLFSRARWRENRTI 62
D+ RTV +IG+L G+AL+ V I + + F ++ R I
Sbjct: 254 DDVGRTV-AIIIGILAGLALLVVFISFLRKAFGLQSAKKKRLI 295
>01_06_0538 + 30076103-30076153,30076716-30076967
Length = 100
Score = 26.6 bits (56), Expect = 2.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 2 VPLVTVDGAVICTPVKPVDESTRTVD--PAMIGVLVGMALMFVIICVVLRLFSRARWREN 59
VPLV G I P + T PA++G L+ ++ ++ + + A WREN
Sbjct: 18 VPLVLAIGPEIPLLQFPSQQLTIVTFFLPALLGDLISRSISYIFLIDIYYWNQAAVWREN 77
Query: 60 RT 61
T
Sbjct: 78 LT 79
>09_06_0291 -
22066550-22067610,22067721-22067975,22068093-22068207,
22068329-22068381,22068467-22068724,22069110-22069160,
22069577-22069822,22070427-22070652,22070984-22071100
Length = 793
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 43 IICVVLRLFSRARWRENRTIFNTPNPRLMNV 73
I+ + F R REN IFN P+ ++NV
Sbjct: 757 IVINYMYAFLRKICRENSAIFNVPHESMLNV 787
>09_04_0032 - 13953323-13955269
Length = 648
Score = 26.2 bits (55), Expect = 3.7
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 21 ESTRTVDPAMIGVLVGMA--LMFVIICVVLRLFSRARWRENRTIFNTPNPRLMNVSLLRE 78
+S++ A+ G+ VG A L+ + +VL F R R +E R + ++V++ R
Sbjct: 258 KSSKLSGGAIAGIAVGAAAALLVALAVIVLLCFKRGRRKEGRPADVDEDASPVSVTVART 317
Query: 79 SKL 81
K+
Sbjct: 318 DKV 320
>10_01_0069 +
890634-890941,892146-892395,893146-893175,894956-895135,
895418-895669
Length = 339
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 45 CVVLRLFSRARWRENRTIFN 64
CV+++ F+++R REN IF+
Sbjct: 268 CVIVKSFNKSRLRENLGIFD 287
>11_01_0036 +
268028-268168,268734-268839,268920-269031,269126-269241,
269321-269399,269476-269614,269689-269747,269924-270218,
270303-270362,270502-270933
Length = 512
Score = 25.0 bits (52), Expect = 8.5
Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 4 LVTVDGAVICTPVKPVDESTRTV-----DPAMIGVLVGMALMFVIICVVLRLFSRARWRE 58
L+++D ++ VK V E+ + D A I L A + V+ L +R + E
Sbjct: 36 LLSLDMILMDEQVKQVKETAESFPEYYFDFASIDTLQDRANKDQHLSDVIGLLTRMKPIE 95
Query: 59 NR-TIFNTPNPRLMNVSLLRESKLL 82
R T NTPNPRL + RE +LL
Sbjct: 96 TRMTRKNTPNPRLAEI---REIELL 117
>09_06_0074 - 20693840-20694271
Length = 143
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 31 IGVLVGMALMFVIICVVLRLFSRARWRENRTIFNT 65
+ VLV +A + VII +++ L+ RWR N + T
Sbjct: 98 LAVLVAVAFI-VIIPMIILLYEFHRWRANMLMAQT 131
>08_02_1370 +
26457276-26457482,26457600-26457721,26458240-26458293,
26458390-26458431,26458553-26458667,26458746-26458909,
26459280-26459349,26459897-26459995,26460277-26460354
Length = 316
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 4 LVTVDGAVICTPVKPVDESTRTVDPAMI 31
L +D +ICT VK + E +DP +I
Sbjct: 224 LQNLDEPLICTSVKSLSEDEWILDPVII 251
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.138 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,037
Number of Sequences: 37544
Number of extensions: 83240
Number of successful extensions: 250
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 13
length of query: 94
length of database: 14,793,348
effective HSP length: 70
effective length of query: 24
effective length of database: 12,165,268
effective search space: 291966432
effective search space used: 291966432
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)
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