GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002391-TA|BGIBMGA002391-PA|undefined
         (94 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cycl...    28   1.1  
AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor typ...    28   1.1  
AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical...    27   1.9  
U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical pr...    26   3.4  
U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical pr...    26   3.4  
Z71185-14|CAA94912.1|  591|Caenorhabditis elegans Hypothetical p...    26   4.4  
AL021475-4|CAA16315.1|  591|Caenorhabditis elegans Hypothetical ...    26   4.4  
Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical pr...    25   5.9  
AL110484-12|CAB54403.1|   72|Caenorhabditis elegans Hypothetical...    25   5.9  
Z81040-3|CAB02783.2|  417|Caenorhabditis elegans Hypothetical pr...    25   7.7  
AF026213-10|AAB71301.1|  478|Caenorhabditis elegans Protein kina...    25   7.7  
AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinas...    25   7.7  

>AF067623-5|AAC17555.3| 1043|Caenorhabditis elegans Guanylyl cyclase
           protein 23 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 33  VLVGMALMFVIICVVLRLFSRARWRENRTIFNTP 66
           +++G  ++ +II +++  F  +R  ENR + NTP
Sbjct: 429 LIIGGCIVLLIILLIICFFILSRVCENRALANTP 462


>AB201390-1|BAE78830.1| 1073|Caenorhabditis elegans recepotor type
           guanyly cyclase protein.
          Length = 1073

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query: 33  VLVGMALMFVIICVVLRLFSRARWRENRTIFNTP 66
           +++G  ++ +II +++  F  +R  ENR + NTP
Sbjct: 459 LIIGGCIVLLIILLIICFFILSRVCENRALANTP 492


>AL031630-22|CAA20995.2|  454|Caenorhabditis elegans Hypothetical
           protein Y38H6C.17 protein.
          Length = 454

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 18/59 (30%), Positives = 31/59 (52%)

Query: 30  MIGVLVGMALMFVIICVVLRLFSRARWRENRTIFNTPNPRLMNVSLLRESKLLHSQMPS 88
           ++ VL+G AL   II  +L    +A+  ENR + +   P  + +SL+  S  L   +P+
Sbjct: 319 VLKVLLGNALQLFIIVQMLLPSLQAKVSENRKLIHKILPYALRLSLMLVSLSLALAVPN 377


>U39652-5|AAV28338.1|  986|Caenorhabditis elegans Hypothetical
           protein R07E4.1b protein.
          Length = 986

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)

Query: 4   LVTVDGAVICTPVKPVDESTRTV 26
           LVTVD    C P+ PVDE+  TV
Sbjct: 354 LVTVDD---CVPIVPVDENVTTV 373


>U39652-4|AAV28337.1| 1122|Caenorhabditis elegans Hypothetical
           protein R07E4.1a protein.
          Length = 1122

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 3/23 (13%)

Query: 4   LVTVDGAVICTPVKPVDESTRTV 26
           LVTVD    C P+ PVDE+  TV
Sbjct: 490 LVTVDD---CVPIVPVDENVTTV 509


>Z71185-14|CAA94912.1|  591|Caenorhabditis elegans Hypothetical
           protein Y32F6B.2 protein.
          Length = 591

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/40 (22%), Positives = 23/40 (57%)

Query: 21  ESTRTVDPAMIGVLVGMALMFVIICVVLRLFSRARWRENR 60
           E T+ +     G++  + L+F ++ V+L   + +RW+ ++
Sbjct: 519 EPTQNISVTSNGLVCSLGLLFAMLIVLLTCVAISRWKMDK 558


>AL021475-4|CAA16315.1|  591|Caenorhabditis elegans Hypothetical
           protein Y32F6B.2 protein.
          Length = 591

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/40 (22%), Positives = 23/40 (57%)

Query: 21  ESTRTVDPAMIGVLVGMALMFVIICVVLRLFSRARWRENR 60
           E T+ +     G++  + L+F ++ V+L   + +RW+ ++
Sbjct: 519 EPTQNISVTSNGLVCSLGLLFAMLIVLLTCVAISRWKMDK 558


>Z99270-2|CAB16469.3|  477|Caenorhabditis elegans Hypothetical
           protein Y37A1A.2 protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 7/16 (43%), Positives = 14/16 (87%)

Query: 30  MIGVLVGMALMFVIIC 45
           ++G+L+G+A MF ++C
Sbjct: 433 IVGLLIGIAAMFAVLC 448


>AL110484-12|CAB54403.1|   72|Caenorhabditis elegans Hypothetical
          protein Y38E10A.12 protein.
          Length = 72

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 39 LMFVIICVVLRLFSRARWRENRTIFNTPNPRLMN 72
          L F+++ + L   S    RE R  + TPN  ++N
Sbjct: 6  LFFIVLALFLATVSAGIIRERRQAYYTPNGAVVN 39


>Z81040-3|CAB02783.2|  417|Caenorhabditis elegans Hypothetical
           protein C26E1.3 protein.
          Length = 417

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 46  VVLRLFSRARWRENRTIFNTPNPRLMNVSLLRESKLLHSQMP 87
           VV  +  +    EN TI   P P  +  S LR S+ LHSQ+P
Sbjct: 162 VVKDILRKLHDHENFTIDGAPYPFDIK-SALRYSEHLHSQIP 202


>AF026213-10|AAB71301.1|  478|Caenorhabditis elegans Protein
          kinase protein 9, isoform a protein.
          Length = 478

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 26 VDPAMIGVLVGMALMFVIICVVLRLF--SRARWRENRTIFNTPNPRLMN 72
          V+   +G+ +G+ L  +   + L +F   R R R+N+  F  P P+ +N
Sbjct: 32 VNAVALGLGIGIPLGIIAFGLALFIFFWCRKRRRQNKNQFPLPFPKKVN 80


>AF026213-9|AAB71302.2|  615|Caenorhabditis elegans Protein kinase
           protein 9, isoform b protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 26  VDPAMIGVLVGMALMFVIICVVLRLF--SRARWRENRTIFNTPNPRLMN 72
           V+   +G+ +G+ L  +   + L +F   R R R+N+  F  P P+ +N
Sbjct: 169 VNAVALGLGIGIPLGIIAFGLALFIFFWCRKRRRQNKNQFPLPFPKKVN 217


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.138    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,242,495
Number of Sequences: 27539
Number of extensions: 73550
Number of successful extensions: 203
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 12
length of query: 94
length of database: 12,573,161
effective HSP length: 69
effective length of query: 25
effective length of database: 10,672,970
effective search space: 266824250
effective search space used: 266824250
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)