GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002390-TA|BGIBMGA002390-PA|IPR013684|Miro-like
         (97 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    32   0.018
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    31   0.032
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    31   0.042
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    29   0.13 
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    29   0.13 
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    29   0.17 
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    28   0.22 
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|...    25   2.8  
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    25   2.8  
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    25   2.8  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    24   3.6  
SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces p...    24   3.6  
SPCC306.06c |||ER membrane protein, BIG1 family |Schizosaccharom...    24   4.8  
SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr 1|||M...    24   4.8  
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo...    24   4.8  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    23   6.4  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    23   6.4  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    23   6.4  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    23   8.4  
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    23   8.4  
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch...    23   8.4  

>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 185

 Score = 31.9 bits (69), Expect = 0.018
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRDEGGPPEM 91
          R+ VLGS   GKS+L  +Y+   +++   P     F K +   G  +   I D  G  E 
Sbjct: 8  RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEY 67

Query: 92 QV 93
           +
Sbjct: 68 SI 69


>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 219

 Score = 31.1 bits (67), Expect = 0.032
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRDEGGPP 89
          E ++ V+G    GKSAL  + +   ++ E  P     ++K+  IDG   LL + D  G  
Sbjct: 8  EYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67

Query: 90 E 90
          E
Sbjct: 68 E 68


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 30.7 bits (66), Expect = 0.042
 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 32  LRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGG--RFKKEVIIDGHSYLLLIRDEGG 87
           + V +LG  ++GKS+L++  L    +   SP+ G  R   EV++D + + +L+ D  G
Sbjct: 240 INVAILGPSNAGKSSLIN-LLANRRISIVSPQSGTTRDAIEVLVDINGFPVLLSDTAG 296


>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 205

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQE-ESPEGGRF-KKEVIIDGHSYLLLIRDEGGPP 89
          L+V +LG    GK++++++Y+   + ++ ++  G  F  KEV++D     L + D  G  
Sbjct: 9  LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68

Query: 90 EMQ 92
            Q
Sbjct: 69 RFQ 71


>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 198

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 25 AARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRF-KKEVIIDGHSYLLLI 82
          A +    ++VG++G    GK++L+  Y+ G++ +E +   G  F +K + I        I
Sbjct: 4  ARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSI 63

Query: 83 RDEGGPPE 90
           D GG  E
Sbjct: 64 WDLGGQRE 71


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 208

 Score = 28.7 bits (61), Expect = 0.17
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQE-ESPEGGRF-KKEVIIDGHSYLLLIRDEGGPP 89
          L+V +LG    GK+ L+++++   + +E ++  G  F  K+V++D     L + D  G  
Sbjct: 9  LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68

Query: 90 EMQ 92
            Q
Sbjct: 69 RFQ 71


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 205

 Score = 28.3 bits (60), Expect = 0.22
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRDEGGPPE 90
          ++ +LG   +GK++L++ +  G + Q   P     +  ++ +DG+S  L + D  G  E
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEE 73


>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 7/19 (36%), Positives = 17/19 (89%)

Query: 31  ELRVGVLGSPDSGKSALVH 49
           ++ VG++G P++GKS++++
Sbjct: 310 QISVGLIGFPNAGKSSIIN 328


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 9/20 (45%), Positives = 16/20 (80%)

Query: 30  TELRVGVLGSPDSGKSALVH 49
           + L VGV+G P+ GKS++++
Sbjct: 268 SSLTVGVIGYPNVGKSSVIN 287


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 24  TAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFK 68
           T   G T++  G++G P+ GKS+ ++  L G+     S   G+ K
Sbjct: 294 TLPDGKTKMTFGLVGYPNVGKSSTINA-LVGSKKVSVSSTPGKTK 337


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 36  VLGSPDSGKSALVHRYLTGAYMQEESPEG 64
           + G+P +GK+A VH  +    +QE S EG
Sbjct: 366 ISGTPGTGKTATVHEVIWN--LQELSREG 392


>SPAC227.14 |||nicotinamide riboside kinase|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 235

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 34 VGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDGHSYLLLIRDEGGPPE 90
          +G+ G P SGKS L    L  A+ +     G    K + +DG  Y L   D    PE
Sbjct: 32 IGLAGGPGSGKSTLC-AILAKAWNER---FGSEIVKIIPMDGFHYSLEELDRFDNPE 84


>SPCC306.06c |||ER membrane protein, BIG1 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 31  ELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE 63
           E  +  LG  +SGKSAL H  L     Q E  +
Sbjct: 208 EFVIQTLGGLNSGKSALQHGQLASLPDQNEGSQ 240


>SPACUNK4.13c |||GTPase Ylf2 |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 407

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)

Query: 32 LRVGVLGSPDSGKSAL 47
          L++G++G P+ GKS L
Sbjct: 46 LKIGIVGMPNIGKSTL 61


>SPBC27.02c |ask1|mug181|DASH complex subunit
           Ask1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 39  SPDSGKSALVHRYLTGAYMQEESP-EGGRFKKEVIID 74
           +P +G+SAL+HR L   +  + +P E    + + ++D
Sbjct: 171 NPHTGRSALLHRVLDTNWQVQVTPREPKNLQSQEVMD 207


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 47  LVHRYLTGAYMQEESPEGGRFKKEVIIDGHSYLLL 81
           LV   +T  Y+ E    G  FKK    D H   LL
Sbjct: 273 LVQCIITSPYVGEFEKHGALFKKLCTTDKHERALL 307


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 216

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 27 RGVTELRVGVLGSPDSGKSALVHRYLTGAY 56
          + V   ++ ++G   +GK+  V R+LTG +
Sbjct: 5  QNVPTFKLVLVGDGGTGKTTFVKRHLTGEF 34


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 23.4 bits (48), Expect = 6.4
 Identities = 8/15 (53%), Positives = 12/15 (80%)

Query: 71  VIIDGHSYLLLIRDE 85
           V+++GHSY +  RDE
Sbjct: 675 VLLNGHSYTVYYRDE 689


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 409

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 31 ELRVGVLGSPDSGKSALVH 49
          ++ +G +G P SGKS +++
Sbjct: 4  DILIGFVGKPSSGKSTMLN 22


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 612

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 72 IIDGHSYLLLIRDEGGPPEMQVSFK 96
          ++ G + +L   D+GG  E+QV ++
Sbjct: 64 VVPGDNTILFTTDDGGKLELQVYYQ 88


>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 703

 Score = 23.0 bits (47), Expect = 8.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)

Query: 11  EVKTDSFVNSQEWTAARGVTELRVGVLG 38
           ++ TDSF  S+E T  + + E+R G  G
Sbjct: 563 DLHTDSFYISRESTIMKRLEEIRNGKAG 590


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 482,515
Number of Sequences: 5004
Number of extensions: 17548
Number of successful extensions: 47
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 21
length of query: 97
length of database: 2,362,478
effective HSP length: 62
effective length of query: 35
effective length of database: 2,052,230
effective search space: 71828050
effective search space used: 71828050
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)