Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002390-TA|BGIBMGA002390-PA|IPR013684|Miro-like
(97 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0893 + 7043130-7043182,7043309-7043335,7043461-7043560,704... 31 0.11
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 31 0.19
08_02_1271 - 25762750-25764276 29 0.44
03_02_0046 - 5255513-5255630,5255715-5255876,5256579-5256733,525... 29 0.44
03_05_0601 + 26039326-26039367,26039958-26040035,26040136-260403... 28 1.0
12_02_1213 + 27058329-27058370,27058634-27058711,27058807-270589... 27 1.8
07_03_1353 - 25966332-25966421,25966477-25966528,25966612-259668... 27 1.8
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 27 1.8
03_06_0408 - 33722741-33722893,33723174-33723350,33723798-337239... 27 1.8
11_06_0499 + 24354810-24355212,24355677-24355735,24355846-243559... 27 2.4
03_02_0352 + 7749902-7751788,7752547-7752615 27 2.4
06_03_0668 + 23301578-23301791,23302102-23302199,23302233-233023... 27 3.1
01_06_1699 - 39269477-39269574,39269690-39269929,39270029-392700... 27 3.1
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162... 27 3.1
11_06_0669 - 26084906-26087350 26 4.1
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160... 26 4.1
10_01_0198 - 2158139-2158334,2158517-2158641,2158736-2158789,215... 26 5.5
09_04_0212 + 15698363-15698615,15698699-15700011,15700323-15700337 26 5.5
08_01_0709 + 6265949-6266452,6267697-6267786,6268257-6268402,626... 26 5.5
01_06_0964 + 33446750-33447868 26 5.5
08_01_0070 + 490655-493165 25 7.2
07_03_0941 - 22763733-22763970,22764077-22764213,22764282-227644... 25 7.2
05_07_0205 - 28402436-28402505,28402604-28402681,28402789-284029... 25 7.2
05_03_0255 + 11100083-11100158,11100244-11100391,11101372-111015... 25 7.2
01_05_0673 + 24183512-24183514,24183625-24183694,24184203-241842... 25 7.2
11_06_0713 + 26524984-26525276,26526008-26526434,26526550-265271... 25 9.5
03_05_0995 - 29545058-29545204,29545988-29546074,29546166-295463... 25 9.5
03_04_0121 - 17429529-17430639,17430721-17430866 25 9.5
03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256... 25 9.5
01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453... 25 9.5
>01_01_0893 +
7043130-7043182,7043309-7043335,7043461-7043560,
7045110-7045256,7045342-7045422,7045509-7045654,
7046030-7046099
Length = 207
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 25 AARGVTELRVGVLGSPDSGKSALVHRYLTGAYM-QEESPEGGRF-KKEVIIDGHSYLLLI 82
A+R L+V +LG GK++L+++Y+ + Q ++ G F KEV ID + L I
Sbjct: 2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQIDDRLFTLQI 61
Query: 83 RDEGGPPEMQ 92
D G Q
Sbjct: 62 WDTAGQERFQ 71
>01_01_1220 +
9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 30.7 bits (66), Expect = 0.19
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 3 EPPPILKHEVKTDSFVNSQEW-TAARGVT-ELRVGVLGSPDSGKSALVHRYLTGAYMQEE 60
E PP L +V + V S W TAA V+ E+ G G+ L H++L G +
Sbjct: 726 EAPPGLAVKVSPERLVFSSRWTTAAYQVSFEIASGGAGAGAGASKGLSHKFLCGGRLIFG 785
Query: 61 SPEGGRFKKEVII 73
G F V+I
Sbjct: 786 PDAGSLFLSTVLI 798
>08_02_1271 - 25762750-25764276
Length = 508
Score = 29.5 bits (63), Expect = 0.44
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIID 74
L G GS SGK VH Y+TG + +P + K +++
Sbjct: 163 LSTGAHGSSVSGKGGAVHEYVTGMRVVTPAPASEGYAKVRVVN 205
>03_02_0046 -
5255513-5255630,5255715-5255876,5256579-5256733,
5256811-5256892,5257790-5257827
Length = 184
Score = 29.5 bits (63), Expect = 0.44
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDGHSYLLLIRDEGGPPE 90
E+ + ++G ++GK++LV+ TG + ++ P G F + G + + + D GG P
Sbjct: 19 EMELSLIGLQNAGKTSLVNVIATGGFSEDMIPTVG-FNMRKVTKG-NVTIKLWDLGGQPR 76
Query: 91 MQ 92
+
Sbjct: 77 FR 78
>03_05_0601 +
26039326-26039367,26039958-26040035,26040136-26040303,
26040994-26041042,26041502-26041575,26041940-26041948
Length = 139
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 25 AARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQ-EESPEGGRFKKEVI 72
A + ++ +LG +GKS+LV R++ G +++ +ES G F + +
Sbjct: 5 AGNKIRNAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTL 53
>12_02_1213 +
27058329-27058370,27058634-27058711,27058807-27058974,
27059834-27059882,27060084-27060157,27060692-27060785,
27060924-27061003,27061311-27061322
Length = 198
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 29 VTELRVGVLGSPDSGKSALVHRYLTGAYMQ-EESPEGGRFKKEVI 72
+ ++ +LG +GKS+LV R++ G +++ +ES G F + +
Sbjct: 9 IRNAKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTIGAAFFSQTL 53
>07_03_1353 -
25966332-25966421,25966477-25966528,25966612-25966803,
25966900-25967199,25967816-25967925,25968696-25968755,
25968835-25968906,25969172-25969348,25969845-25969898,
25970188-25970217,25970985-25971026
Length = 392
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQ 58
+ RVG++G P GKS L+++ LTG + +
Sbjct: 75 DARVGLVGFPSVGKSTLLNK-LTGTFSE 101
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 32 LRVGVLGSPDSGKSALVHRYL 52
+R G++G P+ GKS+L++R L
Sbjct: 401 VRAGIVGYPNVGKSSLINRLL 421
>03_06_0408 -
33722741-33722893,33723174-33723350,33723798-33723947,
33724085-33724145,33724338-33724558
Length = 253
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 23 WTA-ARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEE 60
W++ A ++RV V+G +GKS+LV TG + ++
Sbjct: 5 WSSRAAAKLDVRVAVIGDHGTGKSSLVATIATGRFPDQD 43
>11_06_0499 +
24354810-24355212,24355677-24355735,24355846-24355929,
24356040-24356337,24357026-24357203,24357686-24357746,
24358209-24358391,24358581-24358742,24358844-24359037,
24359354-24359504,24359551-24359578,24359845-24360117,
24360660-24360724
Length = 712
Score = 27.1 bits (57), Expect = 2.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 33 RVGVLGSPDSGKSALVHRYLTG 54
RV ++G P+ GKSAL +R + G
Sbjct: 162 RVAIIGRPNVGKSALFNRLVGG 183
>03_02_0352 + 7749902-7751788,7752547-7752615
Length = 651
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 6 PILKHEVKTDSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHR 50
PI + K SFV +E TA + + G P G + +VHR
Sbjct: 352 PIANYNEKDKSFVYEEEGTAVFKLYAVHSGHEPGPLDGNARIVHR 396
>06_03_0668 +
23301578-23301791,23302102-23302199,23302233-23302301,
23302674-23302961,23303045-23303208,23303344-23303599,
23303706-23303816,23304109-23304195,23305916-23305985,
23306093-23306149,23306309-23306426,23307314-23307403,
23307492-23307671,23307816-23307893,23308016-23308088
Length = 650
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 25 AARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGG 65
AA G ++ ++G +GK+ V R++TG + + P G
Sbjct: 435 AAVGYPSFKLILVGDGGTGKTTFVKRHITGEFEKRYEPTIG 475
>01_06_1699 - 39269477-39269574,39269690-39269929,39270029-39270092,
39270251-39270771,39271032-39271326,39271400-39271564,
39271650-39272237,39272617-39272703,39272982-39274429,
39274515-39275015,39275574-39275678,39276095-39276143
Length = 1386
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 31 ELRVGVLGSPDSGKSALVH 49
E ++GV+G SGKS L+H
Sbjct: 1172 ERKIGVVGRTGSGKSTLIH 1190
>01_06_1314 +
36215607-36215734,36215911-36216043,36216135-36216281,
36217172-36217348,36217469-36217717,36217917-36217964,
36218364-36218419,36218639-36218720,36219260-36219515,
36219563-36219629,36219688-36219724,36219918-36220030,
36220838-36220988,36221352-36221538,36221768-36221841
Length = 634
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 28 GVTELRVGVLGSPDSGKSALV 48
G LRV V+G P +GKS+LV
Sbjct: 12 GKQSLRVVVIGDPGTGKSSLV 32
>11_06_0669 - 26084906-26087350
Length = 814
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 7 ILKHEVKTDSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGR 66
+L HE + D + +R ++ +G+ G P SGKS L + E G
Sbjct: 70 VLLHETENDG-----QHEPSRALSHSIIGIHGIPGSGKSTLAQYVCAHEKRGRQEKEAGH 124
Query: 67 F 67
F
Sbjct: 125 F 125
>03_06_0407 -
33714563-33714636,33714966-33715152,33715943-33716093,
33716520-33716632,33717022-33717085,33717180-33717391,
33717540-33717621,33717811-33717866,33718004-33718072,
33718524-33718772,33718873-33719049,33719556-33719702,
33719794-33719926,33720093-33720307
Length = 642
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 28 GVTELRVGVLGSPDSGKSALVHRYLTGAY 56
G +RV V+G P +GKS+LV T A+
Sbjct: 12 GKQGVRVVVIGDPGTGKSSLVVSVATEAF 40
>10_01_0198 -
2158139-2158334,2158517-2158641,2158736-2158789,
2159038-2159342,2159677-2159860,2159908-2159999,
2161777-2161885
Length = 354
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGA 55
++RV V+G GKS+LVH L G+
Sbjct: 27 QVRVLVVGDSGVGKSSLVHLILKGS 51
>09_04_0212 + 15698363-15698615,15698699-15700011,15700323-15700337
Length = 526
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 15 DSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVH 49
+S V + W LRV V GS + G A+VH
Sbjct: 435 ESTVVPRGWVVPTSARRLRVAVPGSVNPGYRAIVH 469
>08_01_0709 +
6265949-6266452,6267697-6267786,6268257-6268402,
6268534-6268710,6268774-6268840,6268949-6269056,
6269718-6269732
Length = 368
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/18 (50%), Positives = 16/18 (88%)
Query: 32 LRVGVLGSPDSGKSALVH 49
L VG++G+P++GKS+L +
Sbjct: 149 LSVGIVGAPNAGKSSLTN 166
>01_06_0964 + 33446750-33447868
Length = 372
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 30 TELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDG 75
T ++ V +PD GKS V G Y +E+ E G+ K+ ++I G
Sbjct: 246 TTIKEAVDAAPDGGKSRYVIYVKKGVY--KENLEVGKTKRVLMIVG 289
>08_01_0070 + 490655-493165
Length = 836
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 5 PPILKHEVKTDSFVNSQEWTAARGVTELRVGVLGSPDSGKSA 46
PPI+ ++K + + EWTA V++ + + S S +A
Sbjct: 614 PPIIHRDIKPSNILLDGEWTAK--VSDFGLSLASSSSSSATA 653
>07_03_0941 -
22763733-22763970,22764077-22764213,22764282-22764470,
22765238-22765756,22766319-22767357,22767665-22767759,
22768253-22768357
Length = 773
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 29 VTELRVGVLGSPDSGKSALVHRYLTGAY 56
+TELR + G GK +L H+ L AY
Sbjct: 210 ITELRKSLSGLIKIGKGSLAHQVLLKAY 237
>05_07_0205 -
28402436-28402505,28402604-28402681,28402789-28402968,
28403051-28403140,28403258-28403375,28403461-28403517,
28404155-28404224,28404317-28404319
Length = 221
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 36 VLGSPDSGKSALVHRYLTGAYMQEESPEGG 65
++G +GK+ V R+LTG + ++ P G
Sbjct: 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIG 47
>05_03_0255 +
11100083-11100158,11100244-11100391,11101372-11101559,
11101648-11101819,11102637-11102839,11103640-11103762,
11103838-11103941,11105579-11105713
Length = 382
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 36 VLGSPDSGKSALVHRYLTGAYMQEESPE 63
++G D+GKSALV+R +T + +++ P+
Sbjct: 103 LVGPRDAGKSALVNR-ITRVFDKDDDPD 129
>01_05_0673 +
24183512-24183514,24183625-24183694,24184203-24184259,
24184348-24184465,24185044-24185133,24185209-24185388,
24185474-24185551,24185642-24185711
Length = 221
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 36 VLGSPDSGKSALVHRYLTGAYMQEESPEGG 65
++G +GK+ V R+LTG + ++ P G
Sbjct: 18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIG 47
>11_06_0713 +
26524984-26525276,26526008-26526434,26526550-26527171,
26528059-26528099,26528181-26528249,26528565-26528665,
26529300-26529378,26529955-26530053,26530129-26530197,
26530326-26530375,26530482-26530548,26531031-26531125,
26534469-26534856
Length = 799
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 2 NEPPPILKHEVKTDSFVNSQEWT---AARGVTELRVGVLGSPDSGK 44
N PPI+ ++K+ + + + WT A G++ L++ + +GK
Sbjct: 553 NSSPPIVHRDLKSSNLLVDKNWTVKVADFGLSRLKLETFLTTKTGK 598
>03_05_0995 -
29545058-29545204,29545988-29546074,29546166-29546361,
29546686-29546915
Length = 219
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 19 NSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVI 72
++ EW AA + R+ LG PD + +R ++ PE K E++
Sbjct: 11 DAAEWRAALAAYDRRLAALGKPDLVEVDSFYRRDLPDLLRRRDPEPFLAKPELV 64
>03_04_0121 - 17429529-17430639,17430721-17430866
Length = 418
Score = 25.0 bits (52), Expect = 9.5
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 28 GVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDG 75
GV ELR G G PD LV +T + G R E + DG
Sbjct: 126 GVAELRAGAAGVPDEVLVCLVGNMVTEEALPTYQSMGNR--AEGLADG 171
>03_01_0330 +
2566662-2566740,2566821-2566911,2567003-2567057,
2567166-2567297,2567517-2567567,2567769-2567840,
2568590-2568680,2568988-2569066,2569147-2569210,
2569917-2570020,2570182-2570287,2572080-2572157,
2572649-2572801,2573039-2573128,2573284-2573349,
2573485-2573583,2573660-2573734,2574455-2574514,
2574909-2574998,2575202-2575323,2575462-2575591,
2575662-2575741,2576167-2576302,2577005-2577086,
2578475-2578620,2578796-2578876,2578994-2579094,
2579770-2580008,2580100-2580209,2580518-2580646,
2580728-2580802,2581455-2581586,2582298-2582470,
2582566-2582688,2582771-2582831,2582910-2583005,
2583251-2583351,2584014-2584119,2584673-2584786,
2584888-2584962,2585619-2585711,2585883-2585954,
2586253-2586338,2586434-2586527,2586596-2586703,
2586782-2587021
Length = 1579
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 18 VNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQE 59
VN EW + G R L + G SAL+HR L G +Q+
Sbjct: 554 VNDSEWVISLGDAFARQYDLYATCDGHSALLHRCL-GMLLQK 594
>01_04_0053 -
15444421-15444747,15444905-15445116,15445198-15445377,
15445572-15445836,15446308-15446522,15446611-15446784,
15446872-15447010,15447523-15447786
Length = 591
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQEESPEG-GRFKKEVIIDGHSYLL 80
+ VG++G P+ GKS+L++ + S G R +EV +D LL
Sbjct: 269 ITVGIVGLPNVGKSSLINSLKRSRVVNVGSTPGVTRSMQEVQLDKKVKLL 318
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,603,686
Number of Sequences: 37544
Number of extensions: 139159
Number of successful extensions: 218
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 30
length of query: 97
length of database: 14,793,348
effective HSP length: 70
effective length of query: 27
effective length of database: 12,165,268
effective search space: 328462236
effective search space used: 328462236
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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