Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002390-TA|BGIBMGA002390-PA|IPR013684|Miro-like
(97 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4585| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 1e-14
SB_47462| Best HMM Match : Ras (HMM E-Value=0) 40 4e-04
SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19) 36 0.007
SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7) 31 0.14
SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.14
SB_1071| Best HMM Match : Ras (HMM E-Value=0) 31 0.14
SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35) 30 0.25
SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07) 30 0.33
SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.44
SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.58
SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12) 29 0.77
SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.77
SB_45581| Best HMM Match : Ras (HMM E-Value=0.069) 28 1.0
SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21) 28 1.3
SB_36| Best HMM Match : E-MAP-115 (HMM E-Value=0.39) 28 1.3
SB_42246| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.3
SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11) 28 1.3
SB_7874| Best HMM Match : PSI (HMM E-Value=8.4) 28 1.3
SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18) 27 2.4
SB_6741| Best HMM Match : WD40 (HMM E-Value=0) 27 2.4
SB_50855| Best HMM Match : Ras (HMM E-Value=0) 27 2.4
SB_353| Best HMM Match : ACBP (HMM E-Value=0.26) 27 3.1
SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 26 4.1
SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.1
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_37124| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19) 25 7.2
SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35) 25 9.5
SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7) 25 9.5
SB_23096| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 25 9.5
SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17) 25 9.5
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 25 9.5
>SB_4585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 69
Score = 74.5 bits (175), Expect = 1e-14
Identities = 38/59 (64%), Positives = 46/59 (77%), Gaps = 1/59 (1%)
Query: 35 GVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDGHSYLLLIRDEGGPPEMQV 93
GV+GS SGKS LVHRYLTG+ + ES G R KKEVI +G S+LLL+RDE GPP++QV
Sbjct: 1 GVVGSSVSGKSFLVHRYLTGSCAKMESFTG-RHKKEVIYEGQSHLLLVRDETGPPDLQV 58
>SB_47462| Best HMM Match : Ras (HMM E-Value=0)
Length = 385
Score = 39.5 bits (88), Expect = 4e-04
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRF-KKEVIIDGHSYLLLIRDEGG 87
E +V VLGS GKSAL +++TG ++++ P F +KE+ +D + +L I D G
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGQFVEKYDPTIEDFYRKEIEVDNNPSILEILDTAG 60
>SB_52002| Best HMM Match : Ras (HMM E-Value=2.3e-19)
Length = 351
Score = 35.5 bits (78), Expect = 0.007
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 3/60 (5%)
Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVII--DGHSYLLLIRDEGGPP 89
RV VLGS GK++LV R+++G + ++ +P G ++K V + D +++L ++ G P
Sbjct: 109 RVVVLGSGGVGKTSLVKRFISGTFSEQYTPTVGDLYEKSVTLSKDFNAFLEIMDTAGSYP 168
>SB_34024| Best HMM Match : VLPT (HMM E-Value=3.7)
Length = 368
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 36 VLGSPDSGKSALVHRYLTGAYMQEESPEGG 65
VLG+ GK+ALV R++TG ++ E P G
Sbjct: 329 VLGAAGVGKTALVVRFVTGRFLNEYDPTLG 358
>SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 410
Score = 31.1 bits (67), Expect = 0.14
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 43 GKSALVHRYLTGAY-MQEESPEGGRF-KKEVIIDGHSYLLLIRDEGG 87
GKS+L++R++ G + Q G F K+V +DG SY L I D G
Sbjct: 223 GKSSLMNRFVCGKFDTQSFHTIGVEFLNKDVKLDGESYTLQIWDTAG 269
>SB_1071| Best HMM Match : Ras (HMM E-Value=0)
Length = 228
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQEESP 62
E +V VLGS GKSAL +++TG ++++ P
Sbjct: 3 EYKVVVLGSGGVGKSALTVQFVTGQFVEKYDP 34
>SB_24106| Best HMM Match : Ras (HMM E-Value=1e-35)
Length = 263
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRD 84
R+ +LG GK+AL+ R+L ++ E P +++K + ID + L I D
Sbjct: 7 RIALLGDEGVGKTALLVRFLCHRFLGEYDPTIEDKYRKSINIDDVTVTLEILD 59
>SB_45967| Best HMM Match : Ras (HMM E-Value=2.1e-07)
Length = 92
Score = 29.9 bits (64), Expect = 0.33
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRDEGGPPEM 91
++ V+G GKS+L +++ G ++ P F K + G + L + D G E
Sbjct: 8 KIAVMGFRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKNIKYKGQEFFLELVDTAGQDEY 67
Query: 92 QV 93
+
Sbjct: 68 SI 69
>SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 29.5 bits (63), Expect = 0.44
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQEESP-EGGRFKKEVIIDGHSYLLLIRDEGG 87
L V VLG GKSA R LT ++ E P +K + IDG L + D G
Sbjct: 182 LSVAVLGKDGVGKSAFTVRALTRRFIGEYDPFLELNYKHSMEIDGQYLALDVLDTAG 238
>SB_642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2229
Score = 29.1 bits (62), Expect = 0.58
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 1 MNEPPPILKHE-VKTDSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHR------YLT 53
+ +PP +K VKT ++ ++ +ARG +++ ++G GK+ L+HR Y
Sbjct: 521 VTDPPEEIKRNGVKTIMYLRAK-LRSARGYYSMKLMLVGREAQGKTTLMHRLMLDNTYFI 579
Query: 54 GAYMQEESPEGGRFKKEVIIDGHSYLLLIRDEGG 87
+ S E R KK+ + ++ I D GG
Sbjct: 580 NSATNGISMEEFRLKKDFL--HREFIFKIWDFGG 611
>SB_49432| Best HMM Match : Ras (HMM E-Value=1.4e-12)
Length = 460
Score = 28.7 bits (61), Expect = 0.77
Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVI-IDGHSYLLLIRDEGG 87
+RV VLG GKSAL R+LT ++ E + ++ ID L I D G
Sbjct: 17 VRVVVLGKDGVGKSALTVRFLTRRFIGEYDQTLESTHRHILQIDNEDVSLDISDTAG 73
>SB_53505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 28.7 bits (61), Expect = 0.77
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQ-EESPEGGR-FKKEVIIDGHSYLLL 81
T A L+V ++G P+SGKS L+++ + + E P R + V G + ++L
Sbjct: 32 TVAPDTKLLKVAIIGEPNSGKSTLINQLVGEKIVAVTEKPHTTRQVSRGVFTSGGTQIIL 91
Query: 82 IRDEG 86
+ G
Sbjct: 92 LDTPG 96
>SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)
Length = 284
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 29 VTELRVGVLGSPDSGKSALVHRYLTGAYMQE 59
V LRV VLG GKSAL R LT ++ E
Sbjct: 14 VRSLRVVVLGQDGVGKSALTVRLLTKRFIGE 44
>SB_12762| Best HMM Match : Ras (HMM E-Value=2.2e-21)
Length = 242
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 38 GSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRDEGGPPE 90
G+ GK++L+ R+L A+ + SP F K V + +Y L I D G E
Sbjct: 35 GASSVGKTSLILRFLGYAFNDDYSPTIEDFFIKHVFFNNETYELQIIDTSGTYE 88
>SB_36| Best HMM Match : E-MAP-115 (HMM E-Value=0.39)
Length = 383
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 29 VTELRVGVLGSPDSGKSALVH 49
VT+LR+GV G SGKS V+
Sbjct: 156 VTKLRIGVFGPTGSGKSCFVN 176
>SB_42246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 36 VLGSPDSGKSALVHRYLTGAYMQEESP 62
+LG GKSAL+ R+ TG ++ E P
Sbjct: 132 LLGQAGVGKSALLVRFCTGRFIHEYDP 158
>SB_8559| Best HMM Match : Dpy-30 (HMM E-Value=3.7e-11)
Length = 806
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 21 QEWTAARGVTELRVGVLGSPDSGKSALVHRYLT 53
+E+ RG+ +R +LG P SGK+ +V + T
Sbjct: 348 KEYKETRGLLPVRACILGPPASGKTLVVKQLCT 380
>SB_7874| Best HMM Match : PSI (HMM E-Value=8.4)
Length = 275
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 8 LKHEVKTDSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTG 54
L H+VKT SF W V ++G D LVHR++ G
Sbjct: 42 LNHDVKTPSFTVGTSWDQKERVFRNLARLIGPYDD--PVLVHRWVHG 86
>SB_24843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 265
Score = 27.5 bits (58), Expect = 1.8
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 5/95 (5%)
Query: 3 EPPPILKHEVKTDSF-VNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQE-E 60
EPP + D + V+++E+ ++ ++G + GK+ L +R TG + + E
Sbjct: 19 EPPQTEDSQESPDDYAVDTEEFEVL--AKTFKIIIIGDSNVGKTCLAYRLCTGKFPERTE 76
Query: 61 SPEGGRF-KKEVIIDGHSYLLLIRDEGGPPEMQVS 94
+ G F +K + ++G L + D G + S
Sbjct: 77 TTIGVDFWEKSLELNGEFVKLQLWDTAGQERFRKS 111
>SB_8391| Best HMM Match : Dynamin_N (HMM E-Value=9.7e-18)
Length = 957
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 15 DSFVNSQEWTAARGVTELRVGVL--GSPDSGKSALVHRYLTGAYM 57
++F++ QE + +L G +SGKS+L++ L G Y+
Sbjct: 74 NAFISEQETQKFEEFVSKKAAILVVGQTNSGKSSLINELLGGTYL 118
>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
Length = 714
Score = 27.1 bits (57), Expect = 2.4
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 30 TELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDGHSYLLLIRDEGGPP 89
T + G++ SP KS+L TGA Q+ + + + D +L +RD P
Sbjct: 257 TRAKYGIVASPQMEKSSLQRELDTGAMAQQLPQDSKQPSVLQVSDVEPSVLQVRDV-EPS 315
Query: 90 EMQVS 94
+QVS
Sbjct: 316 VLQVS 320
>SB_50855| Best HMM Match : Ras (HMM E-Value=0)
Length = 733
Score = 27.1 bits (57), Expect = 2.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 29 VTELRVGVLGSPDSGKSALVHRYLTGAYMQ-EESPEGGRF-KKEVIIDGHSYLLLIRDEG 86
+ + ++ +LG GKS+LV R++ G + + +ES G F + V +D + I D
Sbjct: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
Query: 87 G 87
G
Sbjct: 79 G 79
>SB_353| Best HMM Match : ACBP (HMM E-Value=0.26)
Length = 395
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 3 EPPPILKHEVKTDSFVNSQEWTA 25
+PPP+L+ K D+ +NS ++TA
Sbjct: 233 DPPPMLRIFKKDDTLINSGDFTA 255
>SB_24089| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 26.2 bits (55), Expect = 4.1
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 30 TELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEG-GRFKKEVIIDGHSYLL 80
T + VGV+G P+ GKS++++ + G + +EV +D H LL
Sbjct: 454 TSITVGVVGFPNVGKSSIINSLKRSRTCTVGATPGVTKSMQEVQLDKHIKLL 505
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQE-ESPEGGRFKKEVIIDGHSYLLLIRDEGG 87
++V ++G GKSAL R+LT ++ E + ++++ + G + + D G
Sbjct: 862 VKVVIIGEDGVGKSALTVRFLTKRFIGEYDDTLESTYRQDAEVAGEVVAIELTDTAG 918
>SB_17958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 271
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDGH 76
+V V+G P GK++L+ R+ G + S G ++D H
Sbjct: 13 KVLVVGDPGVGKTSLIRRFTKGYFCDNSSSTVGVDVGTRVLDIH 56
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 30 TELRVGVLGSPDSGKSALV 48
T++R+ VLG+ +SGKS L+
Sbjct: 111 TDIRMAVLGNVESGKSTLL 129
>SB_37124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 31 ELRVGVLGSPDSGKSALVHRYL 52
+++V +LG SGK++LV RYL
Sbjct: 27 DVKVVLLGKEYSGKTSLVERYL 48
>SB_42812| Best HMM Match : RVT_1 (HMM E-Value=8.4e-19)
Length = 769
Score = 25.4 bits (53), Expect = 7.2
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 4 PPPILKHEVKTDSFVNSQEWTAARGVTELRVGVLGSPDSGKSA--LVHRY 51
P ++ T + QEWT +RG+T L G P + +A LVH +
Sbjct: 518 PHTLVTDNATTFTSKEFQEWTKSRGITHL-TGAQYHPATNGTAERLVHTF 566
>SB_26062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1535
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 41 DSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDGHSYLLLI 82
DS +S L R+L ++SP G + +D ++++L+
Sbjct: 446 DSDESVLFPRWLEEGRPSDDSPSGDDLMSHLYVDIPTFVILL 487
>SB_45519| Best HMM Match : RNB (HMM E-Value=1.6e-35)
Length = 2748
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 28 GVTELRVGVLGSPDSGKSALVHRYLTGAYMQ 58
G T R+ V+GS GKS++ RYL + +
Sbjct: 2595 GETMFRLCVVGSGGVGKSSVTIRYLKNEFTE 2625
>SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 68 KKEVIIDGHSYLLLIRDEGGPPEMQ 92
+K++ +DG RD GPPE Q
Sbjct: 722 RKKINLDGRGSHTAERDSDGPPEQQ 746
>SB_25256| Best HMM Match : G-patch (HMM E-Value=3.7)
Length = 389
Score = 25.0 bits (52), Expect = 9.5
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 10/90 (11%)
Query: 15 DSFVNSQEW--TAARGVTEL--RVGVLGSPDSGKSALVHRYLTGAYMQEESPE----GGR 66
D N +W T G RVG S +G+ + Y+ + +++ G +
Sbjct: 172 DGATNCDQWGNTDFHGALRYLHRVGYYISRGTGQVYTIGFYVLKFFCDDDNANTINVGDK 231
Query: 67 FKKEVIIDGHSYLLLIRDEGGPPEMQVSFK 96
F + + GH Y ++I D+G P Q + K
Sbjct: 232 FI--IFVRGHDYEIIIIDDGSPDGTQEAAK 259
>SB_23096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDGHSYLLLIRDEGGP 88
+ +V ++ K ++H L+ ++ P +FK ++I H Y L+I+ E P
Sbjct: 86 QFKVKIIHPSHQFKLVIIHERLSIPFISTNLPL--QFKVKIIHPSHQYKLVIQREDYP 141
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 35 GVLGSPDSGKSALVHRYLT--GAYMQEESPEGGRFKKEVIID 74
G++ PD+GK+ L + L GA + + + + KK D
Sbjct: 14 GIISHPDAGKTTLTEKLLLFGGAIQEAGAVKSNKIKKGATSD 55
>SB_6025| Best HMM Match : MMR_HSR1 (HMM E-Value=1.1e-17)
Length = 98
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 34 VGVLGSPDSGKSALVHRYL 52
V V+G P+ GKS LV+R L
Sbjct: 24 VAVVGRPNVGKSTLVNRIL 42
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 31 ELRVGVLGSPDSGKSALV 48
E+RV V+G+ D+GKS L+
Sbjct: 229 EVRVAVVGNVDAGKSTLL 246
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,722,885
Number of Sequences: 59808
Number of extensions: 135995
Number of successful extensions: 196
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 38
length of query: 97
length of database: 16,821,457
effective HSP length: 71
effective length of query: 26
effective length of database: 12,575,089
effective search space: 326952314
effective search space used: 326952314
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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