Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002390-TA|BGIBMGA002390-PA|IPR013684|Miro-like
(97 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical... 114 8e-27
AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical... 114 8e-27
AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gam... 114 8e-27
AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gam... 111 6e-26
AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical... 91 8e-20
M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein pro... 41 2e-04
Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical pr... 40 3e-04
Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical pr... 39 6e-04
Z81039-11|CAB02777.2| 181|Caenorhabditis elegans Hypothetical p... 38 0.001
U13070-10|AAC46644.3| 294|Caenorhabditis elegans Hypothetical p... 34 0.014
U13070-8|AAN84828.1| 433|Caenorhabditis elegans Hypothetical pr... 34 0.014
AB079783-1|BAB84821.1| 433|Caenorhabditis elegans endo-beta-N-a... 34 0.014
Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical pr... 31 0.096
U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding pro... 31 0.096
U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog ... 31 0.096
CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical ... 31 0.096
CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical ... 31 0.096
AF045637-2|AAN63433.1| 168|Caenorhabditis elegans R-ras related... 31 0.096
AF045637-1|AAK72295.1| 212|Caenorhabditis elegans R-ras related... 31 0.096
AC024853-3|ABP57809.1| 244|Caenorhabditis elegans Hypothetical ... 31 0.13
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 29 0.68
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 28 0.90
Z75710-3|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 1.2
Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical p... 27 1.6
Z49068-10|CAA88860.1| 556|Caenorhabditis elegans Hypothetical p... 27 1.6
Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical pr... 27 2.7
U13070-9|AAU05578.1| 388|Caenorhabditis elegans Hypothetical pr... 27 2.7
Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical pr... 26 3.6
AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family pr... 26 3.6
AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein. 26 3.6
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 26 4.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 26 4.8
Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical pr... 26 4.8
AF100306-8|ABB88213.1| 860|Caenorhabditis elegans Hypothetical ... 25 6.3
AF100306-7|ABB88214.1| 895|Caenorhabditis elegans Hypothetical ... 25 6.3
Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical pr... 25 8.3
U97405-7|AAB53006.1| 125|Caenorhabditis elegans Hypothetical pr... 25 8.3
L23645-1|AAK26138.1| 582|Caenorhabditis elegans Hypothetical pr... 25 8.3
>AL031633-13|CAA21027.1| 951|Caenorhabditis elegans Hypothetical
protein Y39A1A.15b protein.
Length = 951
Score = 114 bits (275), Expect = 8e-27
Identities = 48/72 (66%), Positives = 63/72 (87%)
Query: 15 DSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIID 74
D+FVNS EWT +R ++E+++G++G+ SGK+ALVHRYLTG Y +ESPEGGRFKKEV+I+
Sbjct: 62 DAFVNSHEWTLSRSISEMKLGIVGTSQSGKTALVHRYLTGTYTPDESPEGGRFKKEVVIE 121
Query: 75 GHSYLLLIRDEG 86
G S+LLLIRDEG
Sbjct: 122 GQSHLLLIRDEG 133
>AL031633-12|CAA21026.2| 1107|Caenorhabditis elegans Hypothetical
protein Y39A1A.15a protein.
Length = 1107
Score = 114 bits (275), Expect = 8e-27
Identities = 48/72 (66%), Positives = 63/72 (87%)
Query: 15 DSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIID 74
D+FVNS EWT +R ++E+++G++G+ SGK+ALVHRYLTG Y +ESPEGGRFKKEV+I+
Sbjct: 218 DAFVNSHEWTLSRSISEMKLGIVGTSQSGKTALVHRYLTGTYTPDESPEGGRFKKEVVIE 277
Query: 75 GHSYLLLIRDEG 86
G S+LLLIRDEG
Sbjct: 278 GQSHLLLIRDEG 289
>AJ132700-1|CAA10736.1| 952|Caenorhabditis elegans centaurin gamma
1A protein.
Length = 952
Score = 114 bits (275), Expect = 8e-27
Identities = 48/72 (66%), Positives = 63/72 (87%)
Query: 15 DSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIID 74
D+FVNS EWT +R ++E+++G++G+ SGK+ALVHRYLTG Y +ESPEGGRFKKEV+I+
Sbjct: 62 DAFVNSHEWTLSRSISEMKLGIVGTSQSGKTALVHRYLTGTYTPDESPEGGRFKKEVVIE 121
Query: 75 GHSYLLLIRDEG 86
G S+LLLIRDEG
Sbjct: 122 GQSHLLLIRDEG 133
>AJ132701-1|CAA10737.1| 1107|Caenorhabditis elegans centaurin gamma
1B protein.
Length = 1107
Score = 111 bits (268), Expect = 6e-26
Identities = 47/72 (65%), Positives = 62/72 (86%)
Query: 15 DSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIID 74
D+FVNS EWT +R ++E+++G++G+ SGK+ALVHRYLTG Y +ESPEGGRFK EV+I+
Sbjct: 218 DAFVNSHEWTLSRSISEMKLGIVGTSQSGKTALVHRYLTGTYTPDESPEGGRFKGEVVIE 277
Query: 75 GHSYLLLIRDEG 86
G S+LLLIRDEG
Sbjct: 278 GQSHLLLIRDEG 289
>AL031633-14|CAA21032.1| 903|Caenorhabditis elegans Hypothetical
protein Y39A1A.15c protein.
Length = 903
Score = 91.5 bits (217), Expect = 8e-20
Identities = 39/56 (69%), Positives = 49/56 (87%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFKKEVIIDGHSYLLLIRDEG 86
+ R+G++G+ SGK+ALVHRYLTG Y +ESPEGGRFKKEV+I+G S+LLLIRDEG
Sbjct: 30 KFRIGIVGTSQSGKTALVHRYLTGTYTPDESPEGGRFKKEVVIEGQSHLLLIRDEG 85
>M55535-1|AAA28103.1| 187|Caenorhabditis elegans ras protein
protein.
Length = 187
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 27 RGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRDE 85
R +TE ++ V+G GKSAL + + +++E P ++K+V+IDG + LL I D
Sbjct: 2 RVMTEYKLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDT 61
Query: 86 GGPPE 90
G E
Sbjct: 62 AGQEE 66
>Z68302-3|CAA92630.1| 184|Caenorhabditis elegans Hypothetical
protein ZK792.6 protein.
Length = 184
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 29 VTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRDEGG 87
+TE ++ V+G GKSAL + + +++E P ++K+V+IDG + LL I D G
Sbjct: 1 MTEYKLVVVGDGGVGKSALTIQLIQNHFVEEYDPTIEDSYRKQVVIDGETCLLDILDTAG 60
Query: 88 PPE 90
E
Sbjct: 61 QEE 63
>Z54236-8|CAA90983.1| 188|Caenorhabditis elegans Hypothetical
protein C27B7.8 protein.
Length = 188
Score = 38.7 bits (86), Expect = 6e-04
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLIRDEGG 87
E ++ VLGS GKSAL +++ G ++++ P ++K+V +DG +L I D G
Sbjct: 3 EYKIVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAG 60
>Z81039-11|CAB02777.2| 181|Caenorhabditis elegans Hypothetical
protein C25D7.7 protein.
Length = 181
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRF-KKEVIIDGHSYLLLIRDEGG 87
E +V VLGS GKSAL ++++ ++++ P F +KE+ +DG +L I D G
Sbjct: 3 EFKVVVLGSGGVGKSALTVQFVSSTFIEKYDPTIEDFYRKEIEVDGQPSVLEILDTAG 60
>U13070-10|AAC46644.3| 294|Caenorhabditis elegans Hypothetical
protein F01F1.10a protein.
Length = 294
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 40 PDSGKSALVHRYLTGAYMQEESPEGGRFKKE 70
P SG+ LV + G Y++EES EG +F+K+
Sbjct: 34 PHSGRQILVCHDMRGGYLEEESTEGKKFEKD 64
>U13070-8|AAN84828.1| 433|Caenorhabditis elegans Hypothetical
protein F01F1.10b protein.
Length = 433
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 40 PDSGKSALVHRYLTGAYMQEESPEGGRFKKE 70
P SG+ LV + G Y++EES EG +F+K+
Sbjct: 34 PHSGRQILVCHDMRGGYLEEESTEGKKFEKD 64
>AB079783-1|BAB84821.1| 433|Caenorhabditis elegans
endo-beta-N-acetylglucosaminidase protein.
Length = 433
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 40 PDSGKSALVHRYLTGAYMQEESPEGGRFKKE 70
P SG+ LV + G Y++EES EG +F+K+
Sbjct: 34 PHSGRQILVCHDMRGGYLEEESTEGKKFEKD 64
>Z22178-5|CAA80155.1| 207|Caenorhabditis elegans Hypothetical
protein F54C8.5 protein.
Length = 207
Score = 31.5 bits (68), Expect = 0.096
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQE-ESPEGGRFKKEVIIDGHSYLLLIRDEGGPPEM 91
+V V+G P GKSALV R+ + + ES + K + Y L + D G E
Sbjct: 15 KVAVMGYPHVGKSALVLRFTQNIFPERYESTIEDQHSKHIAAFHRDYHLRVTDTAGQQEY 74
Query: 92 QV 93
V
Sbjct: 75 TV 76
>U56933-1|AAB66712.1| 212|Caenorhabditis elegans GTP binding
protein protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.096
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLI 82
TAA+ LR+ V+G GKSAL +++ ++Q+ P + K+ +D L I
Sbjct: 10 TAAQQNAVLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEI 69
Query: 83 RDEGGPPE 90
D G E
Sbjct: 70 LDTAGQEE 77
>U56930-1|AAB03320.1| 212|Caenorhabditis elegans R-ras1 homolog
protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.096
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLI 82
TAA+ LR+ V+G GKSAL +++ ++Q+ P + K+ +D L I
Sbjct: 10 TAAQQNAVLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEI 69
Query: 83 RDEGGPPE 90
D G E
Sbjct: 70 LDTAGQEE 77
>CU457742-2|CAM36363.1| 168|Caenorhabditis elegans Hypothetical
protein C44C11.1b protein.
Length = 168
Score = 31.5 bits (68), Expect = 0.096
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLI 82
TAA+ LR+ V+G GKSAL +++ ++Q+ P + K+ +D L I
Sbjct: 10 TAAQQNAVLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEI 69
Query: 83 RDEGGPPE 90
D G E
Sbjct: 70 LDTAGQEE 77
>CU457742-1|CAM36362.1| 212|Caenorhabditis elegans Hypothetical
protein C44C11.1a protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.096
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLI 82
TAA+ LR+ V+G GKSAL +++ ++Q+ P + K+ +D L I
Sbjct: 10 TAAQQNAVLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEI 69
Query: 83 RDEGGPPE 90
D G E
Sbjct: 70 LDTAGQEE 77
>AF045637-2|AAN63433.1| 168|Caenorhabditis elegans R-ras related
protein 1, isoform b protein.
Length = 168
Score = 31.5 bits (68), Expect = 0.096
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLI 82
TAA+ LR+ V+G GKSAL +++ ++Q+ P + K+ +D L I
Sbjct: 10 TAAQQNAVLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEI 69
Query: 83 RDEGGPPE 90
D G E
Sbjct: 70 LDTAGQEE 77
>AF045637-1|AAK72295.1| 212|Caenorhabditis elegans R-ras related
protein 1, isoform a protein.
Length = 212
Score = 31.5 bits (68), Expect = 0.096
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVIIDGHSYLLLI 82
TAA+ LR+ V+G GKSAL +++ ++Q+ P + K+ +D L I
Sbjct: 10 TAAQQNAVLRIVVVGGGGVGKSALTIQFIQRYFVQDYDPTIEDSYTKQCFVDEDLCKLEI 69
Query: 83 RDEGGPPE 90
D G E
Sbjct: 70 LDTAGQEE 77
>AC024853-3|ABP57809.1| 244|Caenorhabditis elegans Hypothetical
protein Y71F9AR.2 protein.
Length = 244
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQE-ESPEGGRFKKEVIIDGHSYLLLIRD 84
EL V ++G SGKSA+ +Y+T ++ E +S + ++ + G S ++ + D
Sbjct: 9 ELHVALVGMAGSGKSAIAVKYITKRFIGEYDSTLEDNYCRQETVGGQSLMVWMMD 63
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 28.7 bits (61), Expect = 0.68
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 29 VTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFK-KEVIIDGHSYLLLIRDEG 86
+T L++ ++G GKS+L+ R++ + E++ G F+ + IDG+ L I D
Sbjct: 9 LTTLKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMAIDGNRVKLAIWDTA 68
Query: 87 G 87
G
Sbjct: 69 G 69
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 28.3 bits (60), Expect = 0.90
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYM-QEESPEGGRF-KKEVIIDGHSYLLLIRDEGGPP 89
L+V +LG GK++L+++Y+ + Q ++ G F ++V ID + L I D G
Sbjct: 10 LKVIILGDSGVGKTSLMNQYVNRRFSNQYKATIGADFLTRDVNIDDRTVTLQIWDTAGQE 69
Query: 90 EMQ 92
Q
Sbjct: 70 RFQ 72
>Z75710-3|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 1.2
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 27 RGVTELRVGVLGSPDSGKSALVHRYLTGAYMQEESPEGGRFK--KEVIIDGHSYLLLIRD 84
R ++ V VLG+ GKSA+V ++L ++++ P F + I +G ++ I D
Sbjct: 18 RRQNKVTVAVLGAERVGKSAMVSQFLWHKFVEDYRPTVEEFNWIEYEIEEGRVLMVQIID 77
Query: 85 EGG 87
G
Sbjct: 78 SSG 80
>Z73103-10|CAA97427.2| 205|Caenorhabditis elegans Hypothetical
protein C08F8.7 protein.
Length = 205
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQE-ESPEGGRFKKEVIIDGHSYLLLIRDEGG 87
E ++ VLG+ GKSAL +Y+ G ++ ++ ++K +D + L I D G
Sbjct: 3 EYKIVVLGNGGVGKSALTLQYVQGIFVHTYDATIEDSYRKLSKVDAENARLEILDTAG 60
>Z49068-10|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 27.5 bits (58), Expect = 1.6
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 30 TELRVGVLGSPDSGKSALVH 49
T +RVGV+G P+ GKS++++
Sbjct: 258 TSIRVGVVGFPNVGKSSVIN 277
>Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical
protein W04G5.2 protein.
Length = 198
Score = 26.6 bits (56), Expect = 2.7
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQEESPE-GGRFKKEVI-IDGHSYLLLIRDEGG 87
++ ++G+P GKS L+ R+ + + P G F ++I ++G + + I D G
Sbjct: 10 KIVLIGNPGVGKSNLLSRFTRNEFNLKSKPTIGVEFATKIISVEGKAVKVQIWDTAG 66
>Z92773-1|CAB07131.1| 395|Caenorhabditis elegans Hypothetical
protein W08E3.3 protein.
Length = 395
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 30 TELRVGVLGSPDSGKSALVHRYLTGAYMQEES 61
T L+VG+LG P+ GKS + LT + Q E+
Sbjct: 20 TNLKVGILGLPNVGKSTFFN-VLTKSEAQAEN 50
>U13070-9|AAU05578.1| 388|Caenorhabditis elegans Hypothetical
protein F01F1.10c protein.
Length = 388
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 52 LTGAYMQEESPEGGRFKKE 70
+ G Y++EES EG +F+K+
Sbjct: 1 MRGGYLEEESTEGKKFEKD 19
>Z81516-4|CAB04205.1| 208|Caenorhabditis elegans Hypothetical
protein F26H9.6 protein.
Length = 208
Score = 26.2 bits (55), Expect = 3.6
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 31 ELRVGVLGSPDSGKSALVHRYLTGAYMQ-EESPEGGRF-KKEVIIDGHSYLLLIRDEGG 87
+ ++ +LG GKS+LV R++ G + + +ES G F + V +D + I D G
Sbjct: 19 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDATIKFEIWDTAG 77
>AF000192-2|AAB52888.1| 196|Caenorhabditis elegans Rab family
protein 37 protein.
Length = 196
Score = 26.2 bits (55), Expect = 3.6
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQEE--SPEGGRFKKEVIIDGHSYL-LLIRDEGG 87
L+V +LG +GK+ L+ RY GA++ S G ++ ++I G + L I D G
Sbjct: 3 LKVMLLGDSCTGKTCLLIRYKDGAFLNNNFISTVGIDYRNKLITMGDKKVKLQIWDTAG 61
>AB162902-1|BAD32698.1| 196|Caenorhabditis elegans Rab37 protein.
Length = 196
Score = 26.2 bits (55), Expect = 3.6
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 32 LRVGVLGSPDSGKSALVHRYLTGAYMQEE--SPEGGRFKKEVIIDGHSYL-LLIRDEGG 87
L+V +LG +GK+ L+ RY GA++ S G ++ ++I G + L I D G
Sbjct: 3 LKVMLLGDSCTGKTCLLIRYKDGAFLNNNFISTVGIDYRNKLITMGDKKVKLQIWDTAG 61
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHR 50
+ + V L +G+LG DSGK+ L R
Sbjct: 6 STSSSVGPLNLGILGHVDSGKTTLTRR 32
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 24 TAARGVTELRVGVLGSPDSGKSALVHR 50
+ + V L +G+LG DSGK+ L R
Sbjct: 6 STSSSVGPLNLGILGHVDSGKTTLTRR 32
>Z70038-1|CAA93884.1| 2219|Caenorhabditis elegans Hypothetical
protein ZK1067.2 protein.
Length = 2219
Score = 25.8 bits (54), Expect = 4.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 11 EVKTDSFVNSQEWTAARGVTELRVGVLGSPDSGKSALVHRYLTGA--YMQEESP 62
E + D ++S++ AAR V E ++ V G P S L + + G+ Y++ E P
Sbjct: 103 EEEGDHILSSEDVHAARNVCETKILVRGVPQKNDSEL-SKLINGSKLYVRFERP 155
>AF100306-8|ABB88213.1| 860|Caenorhabditis elegans Hypothetical
protein T24C4.6a protein.
Length = 860
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 74 DGHSYLLLIRDEGGPPEMQ 92
DG Y +RDEGG P ++
Sbjct: 790 DGEKYCAYVRDEGGVPLLE 808
>AF100306-7|ABB88214.1| 895|Caenorhabditis elegans Hypothetical
protein T24C4.6b protein.
Length = 895
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 74 DGHSYLLLIRDEGGPPEMQ 92
DG Y +RDEGG P ++
Sbjct: 790 DGEKYCAYVRDEGGVPLLE 808
>Z92803-6|CAB07240.1| 215|Caenorhabditis elegans Hypothetical
protein K01G5.4 protein.
Length = 215
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 28 GVTELRVGVLGSPDSGKSALVHRYLTGAY 56
G+ ++ ++G +GK+ V R+LTG +
Sbjct: 6 GIPTFKLVLVGDGGTGKTTFVKRHLTGEF 34
>U97405-7|AAB53006.1| 125|Caenorhabditis elegans Hypothetical
protein T09B4.3 protein.
Length = 125
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 51 YLTGAYMQEESPEGGRFKKEVIIDGHS 77
+LT A +EE+ E G+F +IDG S
Sbjct: 65 FLTKALAEEETTERGQFFTYYLIDGIS 91
>L23645-1|AAK26138.1| 582|Caenorhabditis elegans Hypothetical
protein F54F2.5a protein.
Length = 582
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 4 PPPILKHEVKTDSFVNSQE 22
PPPI+ KT ++NSQE
Sbjct: 13 PPPIVSENGKTYYYLNSQE 31
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.313 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,858
Number of Sequences: 27539
Number of extensions: 101234
Number of successful extensions: 204
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 39
length of query: 97
length of database: 12,573,161
effective HSP length: 70
effective length of query: 27
effective length of database: 10,645,431
effective search space: 287426637
effective search space used: 287426637
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)
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