GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002390-TA|BGIBMGA002390-PA|IPR013684|Miro-like
         (97 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.13 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   1.2  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   2.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   4.7  

>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.4 bits (53), Expect = 0.13
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 1   MNEPPPILKHEVKTDSFVNSQEWTAARGVT 30
           M  P P++  E+KTD  + S ++T   G T
Sbjct: 410 MYPPVPLIAREIKTDLKLASGDYTIPAGCT 439


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl
          cyclase alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 1.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 33 RVGVLGSPDSGKSALVHRYLTGAYMQEESPE 63
          R+  LG  D GKS      +T   M+EE+ +
Sbjct: 27 RIARLGRDDGGKSRQSSFEVTSLLMREETED 57


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
          protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 8/36 (22%), Positives = 19/36 (52%)

Query: 50 RYLTGAYMQEESPEGGRFKKEVIIDGHSYLLLIRDE 85
          ++  G   +EE+ +G + K    +DG+  + + + E
Sbjct: 64 KFKLGEEFEEETVDGRKVKSVCTLDGNKLIQVQKGE 99


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)

Query: 54  GAYMQEESPEGGRFKKEVIID----GHSYLLLIRDEGGPPEMQVSF 95
           GAY  E+ P+    KKE  ID      + L   R +GG  + +V++
Sbjct: 200 GAYGPEKGPKVPEKKKEDEIDEGKESKTKLSQWRKDGGTVKKKVNY 245


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,893
Number of Sequences: 429
Number of extensions: 988
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 97
length of database: 140,377
effective HSP length: 49
effective length of query: 48
effective length of database: 119,356
effective search space:  5729088
effective search space used:  5729088
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)