GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002389-TA|BGIBMGA002389-PA|IPR013103|Reverse
transcriptase, RNA-dependent DNA polymerase
         (179 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   1.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   3.3  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 57  FCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSEEVDDNLLTYEDVMRGSEQEE 116
           F + +  + + +L  I+   K+  + P+W G  +   S+++     +  +D  RG +   
Sbjct: 513 FDEDQDRNLASDLAKILSQAKQ--EIPEWLGSKSYGGSADQFGGRDIRGDDFGRGQDFSN 570

Query: 117 WSKAMKEEI 125
            +   +EE+
Sbjct: 571 AAAVQEEEV 579


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 26   EDSTCDSLNSTYMTDDATYVPDDTSTTS 53
            E +TCD  ++  + D  T      STTS
Sbjct: 1324 EKATCDGTSNVNVVDIVTTAKPAQSTTS 1351


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.308    0.124    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 45,242
Number of Sequences: 317
Number of extensions: 2019
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 114,650
effective HSP length: 53
effective length of query: 126
effective length of database: 97,849
effective search space: 12328974
effective search space used: 12328974
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)
S2: 41 (20.6 bits)