Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002389-TA|BGIBMGA002389-PA|IPR013103|Reverse
transcriptase, RNA-dependent DNA polymerase
(179 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 28 0.91
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 28 0.91
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 27 1.2
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 27 1.2
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 1.2
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 27 1.6
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 1.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.1
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 27 2.1
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu... 26 2.8
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 26 3.7
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 3.7
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 3.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 4.9
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 4.9
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 4.9
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 25 6.4
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 6.4
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch... 25 6.4
SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.5
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.9 bits (59), Expect = 0.91
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 19 QKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSD 55
Q+ +V S+CDS+NST + DA +V D S D
Sbjct: 76 QESSVPDLSSSCDSINST-VESDAGHVVDSNSFNRID 111
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 27.9 bits (59), Expect = 0.91
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 31 DSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQPI 72
D +NS + + +T +SD+ + ++NH+ EN++ I
Sbjct: 751 DDINSPKLQSKNNQTVEAVNTETSDKLQEKEANHELENIEKI 792
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 27.5 bits (58), Expect = 1.2
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 31 DSLNSTYMTDDATYVPDDTSTTSSDE--FCDSKSNHKSENLQPIIKVEKRTRKKPDWYGY 88
D+++S Y TD T V + DE F D+ S K+ L +++ T ++Y
Sbjct: 519 DTISSYYSTD--TDVSANVMGNRHDEVVFSDTASGEKNTKLN----IDEST----NYYNT 568
Query: 89 NNICQSSEEVDDNLLTYEDVMRGSEQE 115
++I + E D+ Y+D+M G++++
Sbjct: 569 DSIDKVGEPFDEISSGYDDLMNGNDKQ 595
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 27.5 bits (58), Expect = 1.2
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 87 GYNNICQSSEEVDDNLLTYE-DVMRGSEQE---EWSKAMKEEIQ--SFHQN 131
G + Q+SEEVDD L Y D E+E E AM I+ ++H+N
Sbjct: 67 GAEGVLQTSEEVDDELKVYNLDTYDDDEEEAETEGPAAMFSNIRGLAYHEN 117
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.5 bits (58), Expect = 1.2
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 34 NSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENL--QPI 72
++T TDDAT D+S++SS S S+ + +L QP+
Sbjct: 292 DTTNTTDDATNTTSDSSSSSSASASSSSSSSSAASLVSQPV 332
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 27.1 bits (57), Expect = 1.6
Identities = 16/65 (24%), Positives = 28/65 (43%)
Query: 37 YMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSE 96
Y T+D +P D + D +N+ +E Q + T++ P + + S
Sbjct: 239 YSTEDGFELPPDQPADLTTALTDHDTNNVAEEAQMTDLKDSETQRVPSAPDFVHARLQSL 298
Query: 97 EVDDN 101
EVDD+
Sbjct: 299 EVDDD 303
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/93 (18%), Positives = 39/93 (41%)
Query: 9 KETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSEN 68
K+ P E+ + S+ D +S+ +++ +D+S++SSD +S S +
Sbjct: 88 KKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSS 147
Query: 69 LQPIIKVEKRTRKKPDWYGYNNICQSSEEVDDN 101
+ + + D ++ +S +DN
Sbjct: 148 SSSSDSESESSSEGSDSSSSSSSSESESSSEDN 180
Score = 25.4 bits (53), Expect = 4.9
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 24 TSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKP 83
+SEDS S +S ++ ++ D+S+ SSD DS S+ + + T
Sbjct: 248 SSEDSDSSSSSSDSESESSSK-DSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSS 306
Query: 84 DWYGYNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDR 139
D ++ SSE+ + N T S Q + EE S D+ ++ D+
Sbjct: 307 D----SDSSSSSEDGNSNTDTTTS-GEVSAQSSTNSTSSEESTSVKDEDSSKIHDK 357
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 40 DDATYVPDDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPD 84
DD + DD SS++ D K KS+ K +++TRKK +
Sbjct: 160 DDGSEALDDGDIESSEK--DKKKKKKSKENDDAPKKDRKTRKKEE 202
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 66 SENLQPIIKVEKRTRKKPDWYGYNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEI 125
SENL P K+EK + D + +CQ ++ ++ E+ + ++ + K EE
Sbjct: 297 SENLNPWEKLEKEQSAQLDLGDVHRMCQML-HLNASMEFLEETFQKADADHSGKLSFEEF 355
Query: 126 QSF 128
Q F
Sbjct: 356 QHF 358
>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 26.2 bits (55), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 9 KETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPD 47
KE+IP +K AV S S LN+ D++ VPD
Sbjct: 222 KESIPHPTKRRKRAVGSAPSVSTDLNNILDDDNSILVPD 260
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 3.7
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 105 YEDVMRGSEQEEWSKAMKEEIQSFHQNDAW 134
++ V+ G + +W + I+ F++N+AW
Sbjct: 242 WDPVVYGQKHMDWPHDEQNAIEYFYENNAW 271
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 20 KCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQ 70
KC ++D D + T+ T++PD S C ++ ++ +++
Sbjct: 784 KCQTVTDDEGTDQQSDEKSTEPKTFIPDKDYYWSRFPICTERAIYRLSHIK 834
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 3.7
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 15 EEGIQKCAVTSEDSTCDSL-NSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQPI 72
E+ + K + ++ T D NS+Y D + +S+ EF N +EN++ I
Sbjct: 797 EKFVSKVTIENDKCTLDCKDNSSYEVDQVVIACSPSHFSSNIEFSPGLPNFVTENIKSI 855
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 4.9
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 5 VVEEKETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNH 64
V +EKET E I+ A+ +++ + +D T +DT + SS S +
Sbjct: 320 VSDEKETEAKHE-IRAPAIIVRETSSHPSTAVPSENDTTESENDTLSESSTTSISSSPSE 378
Query: 65 KSENLQPIIKVE 76
S+ + KV+
Sbjct: 379 NSDTSDDLTKVD 390
>SPCC132.01c ||SPCC1322.17c|DUF814 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 4.9
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 5 VVEEKETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNH 64
VVE + + SE ++ +VTSED+ D ++ +D +T S K
Sbjct: 714 VVETQGKV-SELKMEGTSVTSEDNIQDVVSEVSYNEDTNNQSTPDTTGSDIHIVSEKRGK 772
Query: 65 KSENLQPIIKVEKRTRKK 82
K + KV + R++
Sbjct: 773 KGSKVITAKKVSAKERRE 790
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 4.9
Identities = 22/98 (22%), Positives = 41/98 (41%), Gaps = 10/98 (10%)
Query: 32 SLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNI 91
+L+S + + T+ P T DE ++S K E Q +++ +P G N+
Sbjct: 624 TLSSLFTWCNQTFAPTVEITAKDDE---TESTSKGEEPQ-------KSKSEPPSAGINST 673
Query: 92 CQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFH 129
+ E L +D + + K ++E IQ F+
Sbjct: 674 SMDNLESSGQALATDDPSQFENLKHRKKQLQEAIQKFN 711
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 6.4
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 2/86 (2%)
Query: 44 YVPDDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSEEVDDNLL 103
++ D S S E + S ++ T + Y + + ++DD+ +
Sbjct: 565 FLDDCVSFFSRPEMTQDSQLNASSGFLTNFSLKDSTDRFYKVLSYEKVSERFVKIDDSYI 624
Query: 104 TYEDVMR--GSEQEEWSKAMKEEIQS 127
TY D+ ++W + EE S
Sbjct: 625 TYSDIFSPLSHSHKDWFRIHTEENSS 650
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 6.4
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 8 EKETIPSEEGIQKCAVTSEDSTCDSLNST--YMTDD-ATYVPDDTSTTSSDEFCDSKSNH 64
+ + +P+EE ++ + E+ L + Y D Y DD S + + DSKSNH
Sbjct: 467 DSKLVPAEEVKKRLLMDLENVEETELTDSPIYFYDTLGNYQEDDRSEDMQNFYQDSKSNH 526
>SPBC25H2.15 |||programmed cell death protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 6 VEEKETIPSEEGIQKCAVTSEDS 28
+EEK++ P E+ + A+TSE S
Sbjct: 121 LEEKKSSPKEKKVNPFAITSESS 143
>SPBPB7E8.01 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 8.5
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 3 QAVVEEKETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKS 62
+++ E+ +T P+ + + + E S DS N+T +T + T+TTSS S +
Sbjct: 476 RSLSEKPKTAPTGKQLALHPLRRETSILDSTNTT-----STNATNTTTTTSSSSTASSSA 530
Query: 63 NHKS 66
+ S
Sbjct: 531 SASS 534
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.308 0.124 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 934,895
Number of Sequences: 5004
Number of extensions: 41715
Number of successful extensions: 142
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 27
length of query: 179
length of database: 2,362,478
effective HSP length: 69
effective length of query: 110
effective length of database: 2,017,202
effective search space: 221892220
effective search space used: 221892220
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 51 (24.6 bits)
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