Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002389-TA|BGIBMGA002389-PA|IPR013103|Reverse
transcriptase, RNA-dependent DNA polymerase
(179 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178 58 5e-09
10_05_0068 + 8774712-8774787,8774812-8774852,8774895-8775743,877... 56 2e-08
09_02_0336 - 7397745-7398308,7398813-7400723 48 3e-06
03_02_0868 + 11937652-11937757,11938097-11938671 42 3e-04
11_06_0554 - 24930437-24930552,24930878-24931079,24931164-249312... 31 0.40
11_02_0151 + 8837444-8837876,8838173-8839434,8839517-8839885,883... 31 0.40
05_03_0389 - 13409848-13409964,13410049-13410114,13410209-134103... 31 0.70
03_03_0149 + 14843880-14844145,14846501-14846561,14846608-148467... 31 0.70
03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661... 31 0.70
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 30 1.2
01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162 30 1.2
12_02_1190 - 26814289-26814438,26814526-26814718,26814998-268152... 29 1.6
05_05_0227 - 23449579-23450459,23450574-23450691 29 1.6
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 29 1.6
03_05_0226 - 22115285-22115404,22115477-22116661,22117037-221178... 29 1.6
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855... 29 2.1
01_05_0148 + 18609853-18610058,18610347-18612669 29 2.1
05_01_0495 - 4136871-4136906,4137043-4137171,4137545-4137694,413... 28 3.7
04_04_0059 + 22418795-22418908,22419064-22419202,22419437-224195... 28 3.7
10_02_0195 + 6578384-6578629,6578710-6579300,6586302-6587512,658... 28 4.9
03_05_0341 + 23300588-23300710,23300958-23301363,23301463-233016... 28 4.9
10_08_0824 + 20821724-20822137,20822457-20822543,20822729-208228... 27 6.5
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 27 6.5
12_02_0661 + 21644328-21644517,21644697-21644875,21644899-216459... 27 8.6
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 27 8.6
09_02_0303 + 7112456-7113244,7113328-7113488,7114523-7114583,711... 27 8.6
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 27 8.6
>04_01_0468 + 6032467-6033670,6033858-6033964,6034122-6034178
Length = 455
Score = 57.6 bits (133), Expect = 5e-09
Identities = 24/62 (38%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 96 EEVDDNL--LTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGENIVACKWVYK 153
E+V++ L TY + + ++E W AM+EE+QS +N W+LV P + V CKW++K
Sbjct: 10 EQVENTLEPATYTEAVVSGDRENWISAMQEEMQSLEKNGTWKLVHLPKQKKPVHCKWIFK 69
Query: 154 KK 155
+K
Sbjct: 70 RK 71
>10_05_0068 +
8774712-8774787,8774812-8774852,8774895-8775743,
8776210-8776582,8776814-8777484
Length = 669
Score = 55.6 bits (128), Expect = 2e-08
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 98 VDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGENIVACKWVYKKKLN 157
+DD + + + + W +A++ E+ S N WE+ +RP G V CKWV+KKKL
Sbjct: 349 MDDTPKSISEAYASPDADYWKEAVRSEMDSIITNGTWEVTERPCGCKPVGCKWVFKKKLR 408
Query: 158 SDNS 161
D +
Sbjct: 409 PDGT 412
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 48.4 bits (110), Expect = 3e-06
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 84 DWYGYNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSG 142
D Y NI +S ++D+ +YE+ MR + EW ++MK+E++S ND W+L + P G
Sbjct: 578 DDYKVYNIEES--HMEDDPTSYEEAMRSARSSEWLESMKDEMKSMKLNDVWDLEEIPKG 634
>03_02_0868 + 11937652-11937757,11938097-11938671
Length = 226
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 125 IQSFHQNDAWELVDRPSGENIVACKWVYKKKLNSD 159
+ S N WE+ +RP G V CKWV+KKKL D
Sbjct: 1 MDSIIANGTWEVTERPYGCKPVGCKWVFKKKLRPD 35
>11_06_0554 -
24930437-24930552,24930878-24931079,24931164-24931269,
24931357-24931599,24932398-24932484,24932695-24932825,
24933177-24933183,24933695-24933789
Length = 328
Score = 31.5 bits (68), Expect = 0.40
Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 23 VTSEDSTCDSLNSTYMTDDATYVP--DDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTR 80
V+S + DS+++ Y + D P D S S + + K+ S++ VE+ R
Sbjct: 59 VSSSEQPNDSVSALYYSTDRLNKPTYDAGSKQGSSKIGEDKTRDDSDD------VEECLR 112
Query: 81 KKPDWYGYNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEE 124
K ++Y +I S ++ + +L YE + EW E+
Sbjct: 113 KLKEYYSKGHIHSSIDDACNEVLAYEHATLTALALEWGMEPPED 156
>11_02_0151 +
8837444-8837876,8838173-8839434,8839517-8839885,
8839963-8840223,8840230-8840442,8840602-8840967,
8841402-8841667,8842087-8842197,8842288-8842317,
8842444-8842465
Length = 1110
Score = 31.5 bits (68), Expect = 0.40
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 1 MIQAVVEEKETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDS 60
+ Q + E P I++ VT S ++ + +D T P T TT+S E C
Sbjct: 545 LAQLQYQRPEDDPDYIPIEQAMVTRRRSKRNAGRAEPESDTTTSGPQPTDTTTSGEACAK 604
Query: 61 KSNHK-SENLQP 71
K K S NL P
Sbjct: 605 KKRGKRSRNLMP 616
>05_03_0389 -
13409848-13409964,13410049-13410114,13410209-13410325,
13410822-13410893,13410979-13411258,13411528-13411730,
13412230-13412316,13412705-13412758,13413042-13413221,
13414402-13414576,13414628-13414918,13414923-13415344
Length = 687
Score = 30.7 bits (66), Expect = 0.70
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 88 YNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFH-QNDAWELVDRP 140
Y +C S + +L++Y D++ + EE +KAM EI+ ND E+ RP
Sbjct: 479 YTQVCASCHSM--SLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRP 530
>03_03_0149 +
14843880-14844145,14846501-14846561,14846608-14846720,
14848448-14848540,14849578-14849793,14853773-14856023
Length = 999
Score = 30.7 bits (66), Expect = 0.70
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 17/97 (17%)
Query: 52 TSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSEEVDD----NLLTYED 107
T +E +K +K +++ I+V W +I +S+ E+DD NL YE+
Sbjct: 212 TRLEEIIQNKDRYKMDDVNKGIEVT--------WKASTSISESNSELDDLQQGNLTLYEE 263
Query: 108 VMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGEN 144
QEE KA+ Q +ND +V SG++
Sbjct: 264 -----HQEELEKALTPTDQELQKNDNRPIVVSVSGKS 295
>03_02_0232 +
6614784-6614882,6616145-6616477,6616708-6616967,
6617328-6617469,6617567-6617938,6618056-6618187,
6618907-6619035,6619125-6621188
Length = 1176
Score = 30.7 bits (66), Expect = 0.70
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 24 TSEDSTCDSL-NSTYMTDDATYVPDDTSTTSSDE 56
+S+D++C +L NST D++T PD + S +E
Sbjct: 541 SSDDNSCSTLRNSTSTNDESTNTPDSRDSASEEE 574
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.9 bits (64), Expect = 1.2
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 15 EEGIQKC---AVTSEDSTCDSLN--STYMTDDATYVPDDTSTTSSDEFCDSKSNHKSE 67
+EG Q C ++ ++ STCD+LN T + +PD+ ++TS + ++ S E
Sbjct: 1334 DEGSQSCEKRSLGAKSSTCDNLNLKDTEFSTPGRELPDERASTSFQDNLEASSTKSIE 1391
>01_06_0825 - 32245725-32245817,32246015-32248017,32248132-32248162
Length = 708
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 11 TIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQ 70
T + E + + +E+ T DS+ STY D V ++ +E + S H Q
Sbjct: 344 TSENAEQLGEVVSLNENVTADSIGSTYTAD---MVEGESGLVHQEEAGEDHSQHS----Q 396
Query: 71 PIIKVEKRTRKKPDWYGYNNICQSSEEVDD--NLLTYED 107
+ +EK ++ + GY+ ++ +D LL YE+
Sbjct: 397 QLASMEKTIEQENNEVGYDGEGLENDRLDQATELLEYEN 435
>12_02_1190 -
26814289-26814438,26814526-26814718,26814998-26815233,
26815363-26815535,26815651-26815701,26816686-26817079
Length = 398
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 96 EEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQS----FHQNDAWEL-VDRPSGENIVACKW 150
+E+ + LT ED+ RG ++W K MK +I F + + +D S ++A W
Sbjct: 296 DELAEAGLTEEDIFRGKVTDKWRKFMKGQILRARLFFDEAEKGVAHLDSASRWPVLASLW 355
Query: 151 VYKKKLNS 158
+Y++ L++
Sbjct: 356 LYRQILDA 363
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 48 DTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSEEVDDNLLTYED 107
DT++ SDE D+ S+ +++ ++P+ + +R DW SE ++ T +
Sbjct: 62 DTASVFSDEPEDAGSDRRADEVRPLSRRTRRPSSSSDW----TTTTDSERSEEAFYTPRN 117
Query: 108 VMRGSEQEEWSKAMKEEI 125
G + S +E+
Sbjct: 118 AQEGRPWQSPSPVSSQEL 135
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 43 TYVPDDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSEEVDDNL 102
T +P S+ C +K ++ +Q + K+ K P ++ ++ ++ + +
Sbjct: 617 TSLPYTKKDVSNVRTCINKETSSNDMMQVLQFFRKKKEKDPKFFYEFDLDENKKSKEGLY 676
Query: 103 LTYEDVMRGS-EQEEWSKAMKEEIQSF 128
YED+M S +EE+ E + S+
Sbjct: 677 DEYEDIMNNSVTEEEFEYLWNEMVDSY 703
>03_05_0226 -
22115285-22115404,22115477-22116661,22117037-22117861,
22118029-22118106,22118370-22118420,22118510-22118581,
22118666-22118667,22119453-22119557,22119668-22119749,
22120178-22120227,22120514-22120567,22121084-22121164,
22121567-22121656,22121884-22121964,22122304-22122544
Length = 1038
Score = 29.5 bits (63), Expect = 1.6
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 43 TYVPDDTSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSEEVDDNL 102
T +P S+ C +K ++ +Q + K+ K P ++ ++ ++ + +
Sbjct: 551 TSLPYTKKDVSNVRTCINKETSSNDMMQVLQFFRKKKEKDPKFFYEFDLDENKKSKEGLY 610
Query: 103 LTYEDVMRGS-EQEEWSKAMKEEIQSF 128
YED+M S +EE+ E + S+
Sbjct: 611 DEYEDIMNNSVTEEEFEYLWNEMVDSY 637
>02_05_0338 -
28084169-28084366,28084414-28085225,28085565-28085595,
28085638-28086214,28086439-28087145,28087188-28087228,
28087253-28087366,28087517-28088108
Length = 1023
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 98 VDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGENIVACKWVYKKKLN 157
VDD + + + + W +A++ E+ S N WE WV+KKKL
Sbjct: 640 VDDTPKSISEAYASPDADYWKEAVRSEMDSIIANGTWE--------------WVFKKKLR 685
Query: 158 SD 159
D
Sbjct: 686 PD 687
>01_05_0148 + 18609853-18610058,18610347-18612669
Length = 842
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 122 KEEIQSFHQNDAWELVDRPSGE---NIVACKWVY-KKKLNSDNSHCIAHNKDTL 171
KEE++ H WEL++ PS E NI+ ++Y +L S +C +D L
Sbjct: 303 KEELRRIHDQLDWELINNPSLEHVRNILYLSYIYLPTQLKSCFLYCSLFPEDHL 356
>05_01_0495 -
4136871-4136906,4137043-4137171,4137545-4137694,
4137782-4137847,4138124-4138168,4139022-4139102,
4139202-4139283,4139571-4139642,4140473-4140573,
4140690-4140806,4140929-4141249
Length = 399
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 49 TSTTSSDEFCDSKSNHKSENLQPIIKVEKRTRKKPDW 85
+ST+ D F D+K+ + + PII VE RK W
Sbjct: 197 SSTSFVDSFADTKAGRYNPRMDPIIPVE-NWRKGSQW 232
>04_04_0059 +
22418795-22418908,22419064-22419202,22419437-22419525,
22420428-22420690,22420793-22420883,22420966-22421325
Length = 351
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 58 CDSKSNHKSENLQPIIKVEKRTRKKPDWY 86
CD S + S IIK KRT++KPDW+
Sbjct: 278 CDCGSLNTSGGETGIIK-RKRTKEKPDWH 305
>10_02_0195 +
6578384-6578629,6578710-6579300,6586302-6587512,
6587593-6587844,6587932-6588042,6588133-6588214,
6588299-6588382,6588464-6588658
Length = 923
Score = 27.9 bits (59), Expect = 4.9
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
Query: 1 MIQAVVEEKETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDS 60
+ Q E E P I++ T S ++ +D AT T TT+S E C
Sbjct: 62 LAQLQYERPEDDPDYIPIKQAMATRRRSKRSAVRVEPDSDTATSGSPQTDTTTSGEACPK 121
Query: 61 KS-NHKSENLQP 71
K K NL P
Sbjct: 122 KKRGEKGRNLLP 133
>03_05_0341 +
23300588-23300710,23300958-23301363,23301463-23301671,
23301944-23302298,23302392-23302630,23303777-23304055
Length = 536
Score = 27.9 bits (59), Expect = 4.9
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 29 TCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHKSENLQPII-KVEKRTRKKPDWYG 87
+C + + D T P D+S +SS++ S + +ENL + EK P Y
Sbjct: 126 SCAGIRNGSCVQDKTVDPVDSSGSSSNDTTQSSRSRNTENLTAMCSSSEKSGEDSPSGYE 185
Query: 88 YN 89
++
Sbjct: 186 FH 187
>10_08_0824 +
20821724-20822137,20822457-20822543,20822729-20822829,
20822917-20822967,20823616-20823790,20823878-20824192,
20824504-20824707,20824799-20825314,20825400-20825609,
20826092-20826280,20827254-20827405,20827685-20827837,
20827925-20828006,20828086-20828475
Length = 1012
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 57 FCDSKSNHKSENLQPIIKVEKRTRKKPDWYGYNNICQSSEE 97
F D K+N EN+ + V + K DW YN + SS E
Sbjct: 171 FADGKANDILENICHVNVVSPPSLKYIDWSKYNAVLLSSLE 211
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 2 IQAVVEEKETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSK 61
+QA V ++ S++ I A + + C S S+Y D +T+ D+ T D +
Sbjct: 179 VQARVRDQRMRLSQDSISLSAAAASAAPCGSSKSSYSVDTSTFW--DSKYTHDFAAADRR 236
Query: 62 SNHKSEN 68
S +S +
Sbjct: 237 SIERSRD 243
>12_02_0661 +
21644328-21644517,21644697-21644875,21644899-21645922,
21647108-21647262
Length = 515
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 1 MIQAVVEEKETIPSEEGIQKCAVTSED 27
+I A+ EEK+ +EG+ KCAV ++
Sbjct: 93 LIYAIKEEKKVKKLQEGLAKCAVLCQN 119
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 96 EEVDDNLLTYEDVMRGSEQE--EWSKAMKEEIQSF-HQNDAWELVDRPSGENIVACKWVY 152
EEV++ + YE++ E+E E + + EE++ + D E + E + K V+
Sbjct: 31 EEVEEEEIEYEEIEEEIEEEEVEEDEDVVEEVEEVDEEEDEEEEEESDETEGVSKTKGVH 90
Query: 153 KKKLNSDNSH 162
+K + H
Sbjct: 91 QKDVTEKGKH 100
>09_02_0303 +
7112456-7113244,7113328-7113488,7114523-7114583,
7114665-7114733,7114862-7114947,7115399-7115456,
7115631-7115843,7116059-7116124,7116368-7116484,
7116595-7116657
Length = 560
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 128 FHQNDAWELVDRPSGENIVACKWVYKKKLNSDNSHCIAHNKDTLKVI 174
F + + W++VD G N +Y K N+D++ + H+++ ++I
Sbjct: 355 FSEKEVWKVVDEVLGTNPRQLSEIYMLKQNADSTG-VLHDQNIEEII 400
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 156 LNSDNSHCIAHNKDTLKVISDRV 178
LN +NS C +HN+D K +++ +
Sbjct: 620 LNGNNSSCQSHNEDMFKELANHI 642
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.308 0.124 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,555,936
Number of Sequences: 37544
Number of extensions: 233341
Number of successful extensions: 608
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 29
length of query: 179
length of database: 14,793,348
effective HSP length: 78
effective length of query: 101
effective length of database: 11,864,916
effective search space: 1198356516
effective search space used: 1198356516
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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