GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002389-TA|BGIBMGA002389-PA|IPR013103|Reverse
transcriptase, RNA-dependent DNA polymerase
         (179 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    23   1.3  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.7  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    21   5.2  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    21   5.2  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    21   5.2  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    21   5.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   5.2  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.1  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 50  STTSSDEFCDSKSNHKSENLQPIIK 74
           S  +++ FC++    K +N+ PI+K
Sbjct: 156 SEVANEMFCETTIGCKDKNMAPILK 180


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 112 SEQEEWSKAMKEEIQSFHQNDAWELVDRPSGENIVACKWV 151
           S+Q EW +   + I+ ++    W      +G+ +    WV
Sbjct: 126 SDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPPTNWV 165


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 112 SEQEEWSKAMKEEIQSFHQNDAWELVDRPSGENIVACKWV 151
           S+Q EW +   + I+ ++    W      +G+ +    WV
Sbjct: 126 SDQHEWFQLSLKNIEPYNNYYIWHPGKIVNGKRVPPTNWV 165


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 88  YNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGE 143
           Y  +C   E++ +   + +   R  E+E+ S   + E + + +       DR   E
Sbjct: 19  YEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERE 74


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 88  YNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGE 143
           Y  +C   E++ +   + +   R  E+E+ S   + E + + +       DR   E
Sbjct: 19  YEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERE 74


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 88  YNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGE 143
           Y  +C   E++ +   + +   R  E+E+ S   + E + + +       DR   E
Sbjct: 19  YEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERE 74


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 88  YNNICQSSEEVDDNLLTYEDVMRGSEQEEWSKAMKEEIQSFHQNDAWELVDRPSGE 143
           Y  +C   E++ +   + +   R  E+E+ S   + E + + +       DR   E
Sbjct: 19  YEKLCNEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERE 74


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 6   VEEKETIPSEEGIQKCAVTSEDSTCDSLNSTYMTDDATYVPDDTSTTSSDEFCDSKSNHK 65
           V E + I ++   +      E +T D      + D+ TY     +  +  EF D  +  K
Sbjct: 544 VAELDQIYADTHAKLVQAAFEQNTTDQSMDIDVCDNQTYTSLQMAMKNPIEFTDLSNERK 603

Query: 66  SENL 69
            E++
Sbjct: 604 YEDV 607


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query: 150 WVYKKKLNSDNSHCIAHNKD 169
           WVYK K + ++ +    NK+
Sbjct: 199 WVYKSKASEEHGNKKKKNKE 218


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.124    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,723
Number of Sequences: 429
Number of extensions: 2497
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 179
length of database: 140,377
effective HSP length: 54
effective length of query: 125
effective length of database: 117,211
effective search space: 14651375
effective search space used: 14651375
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)
S2: 41 (20.6 bits)