GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002388-TA|BGIBMGA002388-PA|undefined
         (142 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3A4U2 Cluster: Putative uncharacterized protein; n=1; ...    32   4.0  
UniRef50_Q95JU1 Cluster: Putative uncharacterized protein; n=2; ...    32   4.0  
UniRef50_UPI0001509CBD Cluster: hypothetical protein TTHERM_0061...    31   6.9  
UniRef50_Q7XVF4 Cluster: OSJNBa0083D01.4 protein; n=2; Oryza sat...    31   9.1  

>UniRef50_Q3A4U2 Cluster: Putative uncharacterized protein; n=1;
           Pelobacter carbinolicus DSM 2380|Rep: Putative
           uncharacterized protein - Pelobacter carbinolicus
           (strain DSM 2380 / Gra Bd 1)
          Length = 305

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 89  TDRRHINEMWLPSALRTASKRFPGPGISGKVDWTFRHYLVASSFPRFKSP 138
           TDR     M    A R    R  G  +  ++ WT+RHYL  S +P + SP
Sbjct: 111 TDRNFGGGMERHLARRKPLSRI-GDSLRKRLPWTWRHYLKPSQYPVYPSP 159


>UniRef50_Q95JU1 Cluster: Putative uncharacterized protein; n=2;
           Eutheria|Rep: Putative uncharacterized protein - Macaca
           fascicularis (Crab eating macaque) (Cynomolgus monkey)
          Length = 854

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)

Query: 51  KSGLIVTTMRKIRKNISYAVWLLILRENLPTL-LEDVPLTDRRHI 94
           K GL +T  RKIR+++SY  W   ++  L  + +ED+P+T +  I
Sbjct: 696 KIGLAITA-RKIREHLSYEDWNYKMQLKLSNIYIEDIPMTTKTDI 739


>UniRef50_UPI0001509CBD Cluster: hypothetical protein
           TTHERM_00616400; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00616400 - Tetrahymena
           thermophila SB210
          Length = 723

 Score = 31.5 bits (68), Expect = 6.9
 Identities = 14/45 (31%), Positives = 29/45 (64%)

Query: 53  GLIVTTMRKIRKNISYAVWLLILRENLPTLLEDVPLTDRRHINEM 97
           G++  T++K+++ I   ++L   R+N+ TL+E+   T  + IN+M
Sbjct: 313 GILKQTIQKLKEGIKVIMFLCNERKNMITLIENQQETIEKQINQM 357


>UniRef50_Q7XVF4 Cluster: OSJNBa0083D01.4 protein; n=2; Oryza sativa
           (japonica cultivar-group)|Rep: OSJNBa0083D01.4 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 538

 Score = 31.1 bits (67), Expect = 9.1
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 82  LLEDVPLTDRRHINEMWLPSALRTASKRFPGPGISGKVDWTFRHYLVASSFPRFKSP 138
           L  DVP   R H++     S +  A    PGP    K+DW  R   +AS   RF  P
Sbjct: 289 LFRDVPRLRRVHLSFSLDSSTVDDAQHPLPGPD-KYKLDWHVRSERMASLVVRFTGP 344


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,650,880
Number of Sequences: 1657284
Number of extensions: 5092675
Number of successful extensions: 10722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10720
Number of HSP's gapped (non-prelim): 4
length of query: 142
length of database: 575,637,011
effective HSP length: 93
effective length of query: 49
effective length of database: 421,509,599
effective search space: 20653970351
effective search space used: 20653970351
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 67 (31.1 bits)