GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002388-TA|BGIBMGA002388-PA|undefined
         (142 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    22   2.4  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   3.2  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   4.2  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.6  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    20   7.4  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    20   7.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    20   9.8  

>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 66  ISYAVWLLILRENLPTLLEDVPL 88
           +S  V+L ++ E +PT  + VPL
Sbjct: 251 LSLTVFLNLVAEKIPTTSDAVPL 273


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 66  ISYAVWLLILRENLPTLLEDVPL 88
           +S  V+L ++ E +PT  + VPL
Sbjct: 251 LSLTVFLNLVAEKIPTTSDAVPL 273


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)

Query: 119 VDWTFRHYLVAS 130
           +DWTF H ++A+
Sbjct: 350 LDWTFCHMMIAA 361


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 99  LPSALRTASKRFPGPGISGKVDWTFRHYLVASSFPRF 135
           L    +   K FP   + G++ W    Y  A+  P F
Sbjct: 283 LTDLYKKIKKAFPPLSLHGQLLWREFFYCAATKNPNF 319


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 66  ISYAVWLLILRENLPTLLEDVPL 88
           +S  V+L ++ E LP + + +PL
Sbjct: 251 LSLTVFLNLVAETLPQVSDAIPL 273


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 66  ISYAVWLLILRENLPTLLEDVPL 88
           +S  V+L ++ E LP + + +PL
Sbjct: 251 LSLTVFLNLVAETLPQVSDAIPL 273


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)

Query: 66  ISYAVWLLILRENLPTLLEDVPL 88
           +S  V+L ++ E LP + + +PL
Sbjct: 251 LSLTVFLNLVAETLPQVSDAIPL 273


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 10  PDKRVDSPRFSRMPE 24
           PDK VDS  F+R  E
Sbjct: 150 PDKYVDSQVFARARE 164


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 60  RKIRKNISYAVWLLI 74
           RKIRKN+ Y +  +I
Sbjct: 93  RKIRKNLYYLLLFVI 107


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 124 RHYLVASSFPRFKSPGF 140
           R  L+ASSF  F+  GF
Sbjct: 122 RANLIASSFEYFEKYGF 138


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,282
Number of Sequences: 317
Number of extensions: 1065
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 142
length of database: 114,650
effective HSP length: 51
effective length of query: 91
effective length of database: 98,483
effective search space:  8961953
effective search space used:  8961953
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.1 bits)
S2: 39 (19.8 bits)