GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002388-TA|BGIBMGA002388-PA|undefined
         (142 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    29   0.36 
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   4.5  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   5.9  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    25   5.9  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   5.9  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    24   7.8  

>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 28.7 bits (61), Expect = 0.36
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 79  LPTLLEDVPLTDRRHINEMWLPSALRTASKRFPGPGISGKVDWT 122
           L  LL++  L D R IN+++ PS     +  F   G+SG + ++
Sbjct: 93  LQELLKETGLKDTRDINKVFSPSKQSDENDNFRRYGVSGGIQYS 136


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)

Query: 62  IRKNISYAVWLLILRENLPTLL 83
           +RKNI+Y+ ++  LRE+  TLL
Sbjct: 834 VRKNIAYSRYINELRESSATLL 855


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 47  NEKRKSGLIVTTMRKIRKNISYAVWLLILRENLPTLLEDVPLTDRRH 93
           N  +KSG + ++   + KNI+  ++LLI    +P   + V  TD +H
Sbjct: 252 NVDQKSGFLTSSETDVPKNINDYIYLLIDDRFVPP--DRVYYTDIKH 296


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 109 RFPGPGISGKVDWTFRHYLVASSFPRFKSP 138
           R P     G+  WTF H  +A++FP+  +P
Sbjct: 75  RLPDVAELGRSTWTFLH-AMAANFPKNPTP 103


>SPBC1683.01 |||inorganic phosphate transporter
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 573

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 77 ENLPTLLEDVPLTDRRHINEMWL 99
          E  P  LE V   D++H N  WL
Sbjct: 16 EERPVPLEQVEAEDQQHENRFWL 38


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 24.2 bits (50), Expect = 7.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 5   KNFFMPDKRVDSPR 18
           KNFF+P   VD PR
Sbjct: 380 KNFFLPSFSVDDPR 393


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 602,893
Number of Sequences: 5004
Number of extensions: 21052
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 44
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 2,362,478
effective HSP length: 66
effective length of query: 76
effective length of database: 2,032,214
effective search space: 154448264
effective search space used: 154448264
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)