GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002388-TA|BGIBMGA002388-PA|undefined
         (142 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y15738-1|CAA75748.1|   87|Homo sapiens sarco /endoplasmic reticu...    31   1.9  
Y15724-1|CAA75739.1| 1029|Homo sapiens sarco/endoplasmic reticul...    31   1.9  
AF458229-1|AAL78968.1|  161|Homo sapiens sarco/endoplasmic retic...    31   1.9  
AF068221-1|AAC24526.1|  496|Homo sapiens sarco-/endoplasmic reti...    31   1.9  
Y15737-1|CAA75747.1|  101|Homo sapiens sarco /endoplasmic reticu...    30   3.3  
AF458228-1|AAL78967.1|  153|Homo sapiens sarco/endoplasmic retic...    29   4.3  

>Y15738-1|CAA75748.1|   87|Homo sapiens sarco /endoplasmic reticulum
           Ca2+ -ATPase protein.
          Length = 87

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 71  WLLILRENLPTLLEDVPL--TDRRHINEMWLPSALRTASKRFPGPGISGKVDWTFRHYLV 128
           W+++L+ +LP +L D  L    R H++    P  LRT S+ +    ++    WT  H  +
Sbjct: 25  WVVVLQISLPVILLDEALKYLSRNHMHACLYPGLLRTVSQAWSRQPLT--TSWTPDHTGL 82

Query: 129 AS 130
           AS
Sbjct: 83  AS 84


>Y15724-1|CAA75739.1| 1029|Homo sapiens sarco/endoplasmic reticulum
            Ca2+ -ATPase protein.
          Length = 1029

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 71   WLLILRENLPTLLEDVPL--TDRRHINEMWLPSALRTASKRFPGPGISGKVDWTFRHYLV 128
            W+++L+ +LP +L D  L    R H++    P  LRT S+ +    ++    WT  H  +
Sbjct: 967  WVVVLQISLPVILLDEALKYLSRNHMHACLYPGLLRTVSQAWSRQPLT--TSWTPDHTGL 1024

Query: 129  AS 130
            AS
Sbjct: 1025 AS 1026


>AF458229-1|AAL78968.1|  161|Homo sapiens sarco/endoplasmic
           reticulum Ca2+ ATPase isoform 3e protein.
          Length = 161

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 71  WLLILRENLPTLLEDVPL--TDRRHINEMWLPSALRTASKRFPGPGISGKVDWTFRHYLV 128
           W+++L+ +LP +L D  L    R H++    P  LRT S+ +    ++    WT  H  +
Sbjct: 76  WVVVLQISLPVILLDEALKYLSRNHMHACLYPGLLRTVSQAWSRQPLT--TSWTPDHTGL 133

Query: 129 AS 130
           AS
Sbjct: 134 AS 135


>AF068221-1|AAC24526.1|  496|Homo sapiens sarco-/endoplasmic
           reticulum Ca-ATPase 3 protein.
          Length = 496

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 71  WLLILRENLPTLLEDVPL--TDRRHINEMWLPSALRTASKRFPGPGISGKVDWTFRHYLV 128
           W+++L+ +LP +L D  L    R H++    P  LRT S+ +    ++    WT  H  +
Sbjct: 434 WVVVLQISLPVILLDEALKYLSRNHMHACLYPGLLRTVSQAWSRQPLT--TSWTPDHTGL 491

Query: 129 AS 130
           AS
Sbjct: 492 AS 493


>Y15737-1|CAA75747.1|  101|Homo sapiens sarco /endoplasmic reticulum
           Ca2+ -ATPase protein.
          Length = 101

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 71  WLLILRENLPTLLEDVPL--TDRRHINEMWLPSALRTASKRFPGPGI--SGKVDWTFRHY 126
           W+++L+ +LP +L D  L    R H++    P  LRT S+ +    +  S   D T R+ 
Sbjct: 25  WVVVLQISLPVILLDEALKYLSRNHMHACLYPGLLRTVSQAWSRQPLTTSWTPDHTGRNE 84

Query: 127 LVASSFPRFKSP 138
              S+  R +SP
Sbjct: 85  PEVSAGNRVESP 96


>AF458228-1|AAL78967.1|  153|Homo sapiens sarco/endoplasmic
           reticulum Ca2+ ATPase isoform 3d protein.
          Length = 153

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 71  WLLILRENLPTLLEDVPL--TDRRHINEMWLPSALRTASKRFPGPGISGKVDWTFRH 125
           W+++L+ +LP +L D  L    R H++    P  LRT S+ +    ++    WT  H
Sbjct: 76  WVVVLQISLPVILLDEALKYLSRNHMHACLYPGLLRTVSQAWSRQPLT--TSWTPDH 130


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,076,500
Number of Sequences: 224733
Number of extensions: 750671
Number of successful extensions: 1353
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1353
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 73,234,838
effective HSP length: 83
effective length of query: 59
effective length of database: 54,581,999
effective search space: 3220337941
effective search space used: 3220337941
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)