GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002388-TA|BGIBMGA002388-PA|undefined
         (142 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122158-1|AAM52670.1|  927|Drosophila melanogaster LD11783p pro...    38   0.007
AF254741-1|AAF66064.1| 1006|Drosophila melanogaster Centaurin Ga...    38   0.007
AE014134-2422|AAF53349.2|  927|Drosophila melanogaster CG31811-P...    38   0.007

>AY122158-1|AAM52670.1|  927|Drosophila melanogaster LD11783p
          protein.
          Length = 927

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 1  MLAVKNFFMPD--KRVDSP-RFSRMPEAXXXXXXXXXXXXXXXXXXVLV--NEKRKSGLI 55
          MLAVKNFF+P+  K  ++P RFSRMPEA                  V+   +EKRKS   
Sbjct: 1  MLAVKNFFLPERAKAPETPQRFSRMPEAFLRSIRRRSLRVKRAKSLVVPDRSEKRKSDSF 60

Query: 56 VTT 58
          V +
Sbjct: 61 VNS 63


>AF254741-1|AAF66064.1| 1006|Drosophila melanogaster Centaurin
          Gamma 1A protein.
          Length = 1006

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 1  MLAVKNFFMPD--KRVDSP-RFSRMPEAXXXXXXXXXXXXXXXXXXVLV--NEKRKSGLI 55
          MLAVKNFF+P+  K  ++P RFSRMPEA                  V+   +EKRKS   
Sbjct: 1  MLAVKNFFLPERAKAPETPQRFSRMPEAFLRSIRRRSLRVKRAKSLVVPDRSEKRKSDSF 60

Query: 56 VTT 58
          V +
Sbjct: 61 VNS 63


>AE014134-2422|AAF53349.2|  927|Drosophila melanogaster
          CG31811-PA, isoform A protein.
          Length = 927

 Score = 37.5 bits (83), Expect = 0.007
 Identities = 26/63 (41%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 1  MLAVKNFFMPD--KRVDSP-RFSRMPEAXXXXXXXXXXXXXXXXXXVLV--NEKRKSGLI 55
          MLAVKNFF+P+  K  ++P RFSRMPEA                  V+   +EKRKS   
Sbjct: 1  MLAVKNFFLPERAKAPETPQRFSRMPEAFLRSIRRRSLRVKRAKSLVVPDRSEKRKSDSF 60

Query: 56 VTT 58
          V +
Sbjct: 61 VNS 63


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,113,617
Number of Sequences: 52641
Number of extensions: 213482
Number of successful extensions: 343
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 3
length of query: 142
length of database: 24,830,863
effective HSP length: 78
effective length of query: 64
effective length of database: 20,724,865
effective search space: 1326391360
effective search space used: 1326391360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)