GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002388-TA|BGIBMGA002388-PA|undefined
         (142 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z32840-5|CAD88215.1|  509|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z32840-4|CAA83680.1|  460|Caenorhabditis elegans Hypothetical pr...    26   8.8  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    26   8.8  

>Z81041-5|CAB02790.1|  715|Caenorhabditis elegans Hypothetical
           protein C27A7.5c protein.
          Length = 715

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 79  LPTLLEDVP-LTDRRHINEMWLPSALRTAS 107
           LP +L D+P L DRR+I E +   A+R  S
Sbjct: 149 LPEVLRDIPPLNDRRYIEESYSNVAVRPYS 178


>Z81041-3|CAB02791.1|  713|Caenorhabditis elegans Hypothetical
           protein C27A7.5a protein.
          Length = 713

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 79  LPTLLEDVP-LTDRRHINEMWLPSALRTAS 107
           LP +L D+P L DRR+I E +   A+R  S
Sbjct: 147 LPEVLRDIPPLNDRRYIEESYSNVAVRPYS 176


>Z73103-3|CAA97423.1|  540|Caenorhabditis elegans Hypothetical
           protein C08F8.4 protein.
          Length = 540

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 57  TTMRKIRKNISYAVWLLILRENLPTLLEDVPLTDRRHINEMWLPSALRTASKRFP 111
           T M+K    I+++V   IL   LP  L + P  +  ++   WL +   +   R P
Sbjct: 247 TAMKKFEAAIAFSVVYTILGSYLPMSLTNDPSINEYNLLIWWLITVAASTVHRLP 301


>Z32840-5|CAD88215.1|  509|Caenorhabditis elegans Hypothetical
           protein C07G2.2c protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 48  EKRKSGLIVTTMRKIRKNISYAVWLLILRENLPTLLEDVPLTDRRH 93
           EK +   I T  + +R+ +     LL  RE+    L+ VP++D +H
Sbjct: 429 EKNQLLAIQTQNQVLRRELERVTALLTERESRCVCLKGVPMSDEQH 474


>Z32840-4|CAA83680.1|  460|Caenorhabditis elegans Hypothetical
           protein C07G2.2b protein.
          Length = 460

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 48  EKRKSGLIVTTMRKIRKNISYAVWLLILRENLPTLLEDVPLTDRRH 93
           EK +   I T  + +R+ +     LL  RE+    L+ VP++D +H
Sbjct: 380 EKNQLLAIQTQNQVLRRELERVTALLTERESRCVCLKGVPMSDEQH 425


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
            unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 75   LRENLPTLLEDVPLTDRRHINEMWLPSALRTASKRFPG 112
            L  NLP+ L D  ++ +    E W  + +    K+F G
Sbjct: 1323 LENNLPSYLPDFEMSGKEMALEKWTQTIMHQYRKKFTG 1360


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.139    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,190,088
Number of Sequences: 27539
Number of extensions: 112276
Number of successful extensions: 238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 12,573,161
effective HSP length: 75
effective length of query: 67
effective length of database: 10,507,736
effective search space: 704018312
effective search space used: 704018312
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)