GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002387-TA|BGIBMGA002387-PA|undefined
         (93 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p...    25   2.4  
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    25   2.4  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    24   3.2  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    23   5.6  
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c...    23   7.4  
SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces p...    23   9.8  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    23   9.8  

>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 446

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 51  PLLAQQIRDHVVAIEVTVCHHEAKMNTINTRDYILKLKSDTLT 93
           P+L + I +  +  +V +C  +  +  +   + ILK+ SD +T
Sbjct: 362 PVLKRMITNEYLNSDVRICIQDDGVEQLMQPENILKISSDIVT 404


>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 114

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 55 QQIRDHVVAIEVTVCHHEAKMNTINTRD 82
          QQI   +V +E     H+  M+T+N+ D
Sbjct: 23 QQIAQKIVDLETDADEHKLVMDTLNSMD 50


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.2 bits (50), Expect = 3.2
 Identities = 9/20 (45%), Positives = 15/20 (75%)

Query: 34  VHPSIYALYDLVELVPDPLL 53
           VHP I++L +++ L PD +L
Sbjct: 475 VHPFIFSLCNIIPLNPDEVL 494


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 9/35 (25%), Positives = 22/35 (62%)

Query: 27  EIQRFESVHPSIYALYDLVELVPDPLLAQQIRDHV 61
           +++RF S +  +Y   D ++ + +P+ A +I +H+
Sbjct: 513 KLKRFMSAYMLLYLRKDKLDELMNPVSADEIPEHL 547


>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces
          pombe|chr 3|||Manual
          Length = 197

 Score = 23.0 bits (47), Expect = 7.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 29 QRFESVHPSIYALYDLV 45
          Q F+ +HP+IY+L  L+
Sbjct: 75 QEFKDLHPNIYSLLRLL 91


>SPAC19G12.04 |||ureidoglycolate hydrolase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 191

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 19 NTSLSIRQEIQRFESVHPSIYALYD 43
          ++S S R+ +  F S HPS++   D
Sbjct: 55 SSSASTRKGVWNFFSTHPSVHPAND 79


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 16  ACLNTSLSIRQEIQRFESV 34
           +CL+ S++I+   +RF SV
Sbjct: 435 SCLDASIAIKPVFERFRSV 453


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 391,107
Number of Sequences: 5004
Number of extensions: 12270
Number of successful extensions: 45
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 7
length of query: 93
length of database: 2,362,478
effective HSP length: 62
effective length of query: 31
effective length of database: 2,052,230
effective search space: 63619130
effective search space used: 63619130
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)