GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002387-TA|BGIBMGA002387-PA|undefined
         (93 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0982 + 12925861-12926211,12926309-12926378,12927190-129272...    27   2.7  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    26   4.6  
06_01_0080 + 644021-645463                                             25   8.1  
05_05_0296 + 23918065-23918907,23919206-23919277,23919330-23919386     25   8.1  
03_05_0617 + 26163161-26163595,26163678-26164202                       25   8.1  
01_06_0917 + 32978306-32978434,32978570-32978645,32979324-329793...    25   8.1  

>03_02_0982 +
           12925861-12926211,12926309-12926378,12927190-12927287,
           12927467-12927615,12928083-12928198,12928521-12928617,
           12929122-12929206,12929303-12929365,12929505-12929645
          Length = 389

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 34  VHPSIYALYDLVELVPDPLLAQQIRDHVVAIE-VTVCH 70
           VH    ++ +LV+   DP L Q I++ ++ ++ V  CH
Sbjct: 288 VHTGYESVLELVDAAVDPSLLQPIKETILQVDGVKGCH 325


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)

Query: 53  LAQQIRDHVVAIEVTVCHHE 72
           LAQ++RD  V ++ T+ HHE
Sbjct: 438 LAQEVRDGNVELKETIKHHE 457


>06_01_0080 + 644021-645463
          Length = 480

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 43  DLVELVPDPLLAQQIRDHVVAIEVTVC 69
           DL  L+ DP  AQ+I D   A    VC
Sbjct: 388 DLANLLVDPEFAQEIMDRQAAWRRVVC 414


>05_05_0296 + 23918065-23918907,23919206-23919277,23919330-23919386
          Length = 323

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/24 (50%), Positives = 12/24 (50%)

Query: 29  QRFESVHPSIYALYDLVELVPDPL 52
           Q  E  HPSI A Y    L P PL
Sbjct: 190 QALEPQHPSIGAPYMATHLAPQPL 213


>03_05_0617 + 26163161-26163595,26163678-26164202
          Length = 319

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 50  DPLLAQQIRDHVVAIEVTVCHHEAKM 75
           D  +A Q R  +V ++  V HH AKM
Sbjct: 124 DVAVAAQARQQLVDVDRLVLHHAAKM 149


>01_06_0917 +
           32978306-32978434,32978570-32978645,32979324-32979391,
           32979868-32979959,32980121-32980194,32980372-32980415,
           32980752-32980803,32981200-32981319,32981391-32981503,
           32981674-32981761,32982144-32982229,32982832-32982918,
           32983149-32983252,32983607-32983709,32983861-32983956,
           32984067-32984256,32984352-32984413,32984560-32984664,
           32985163-32985364,32985473-32985681,32986413-32986537,
           32986644-32986695,32986772-32986858,32987125-32987247,
           32987375-32987629
          Length = 913

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 3/75 (4%)

Query: 18  LNTSLSIRQEIQRFESVHPS--IYALYDLVELVPDPLLAQQIRDHVVAIEVTVCHHEAKM 75
           LN S  +   I  ++  H    I  ++  + L+ +  + + I D +VAI  T  H++ K+
Sbjct: 270 LNISWPVTPNIHFYKEEHMEDIIGLVFKYILLLKENGIHEWIYDELVAINETEFHYQDKV 329

Query: 76  NTIN-TRDYILKLKS 89
           + I+   D +  ++S
Sbjct: 330 HPISYVTDIVTTMRS 344


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.134    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,355,320
Number of Sequences: 37544
Number of extensions: 70200
Number of successful extensions: 203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 6
length of query: 93
length of database: 14,793,348
effective HSP length: 70
effective length of query: 23
effective length of database: 12,165,268
effective search space: 279801164
effective search space used: 279801164
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)