Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002387-TA|BGIBMGA002387-PA|undefined
(93 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25260| Best HMM Match : PqiA (HMM E-Value=0.3) 30 0.22
SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.6
SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37) 27 2.8
SB_54374| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7
SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 3.7
SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.8
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 6.4
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.4
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 25 8.4
SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.4
SB_32688| Best HMM Match : PAZ (HMM E-Value=7.7) 25 8.4
>SB_25260| Best HMM Match : PqiA (HMM E-Value=0.3)
Length = 365
Score = 30.3 bits (65), Expect = 0.22
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 52 LLAQQIRDHVVAIEVTVCHHEAKMNTINTRDYILKL 87
L++ ++RDH V VCH ++TI T +I+ L
Sbjct: 254 LMSYRLRDHGVINSTAVCHTRTMLSTIMTLTFIIFL 289
>SB_1724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 899
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 13 HSQACLNTSLSIRQEIQRFESVHPSIYALYDLVE-----LVPDPLLAQQIR 58
H+ C+ RQ+++ H I A Y + ++PD L+ QQ+R
Sbjct: 784 HANRCVLPDHLTRQQVRTTRPTHTPIGAFYQTIAYANRCILPDQLIRQQVR 834
>SB_20773| Best HMM Match : DNA_pol_B_exo (HMM E-Value=2.5e-37)
Length = 1652
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 34 VHPSIYALYDLVELVPDPLLAQQIRD-HVVAIEVTVCHH 71
VHP I+AL ++ + PD + + D HV+ E V H
Sbjct: 462 VHPFIFALCTIIPMEPDEVFNKLTNDGHVLDSETYVGGH 500
>SB_54374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 39 YALYDLVELVPDPLLAQQIRDHVVAIEVTVCHHEAKMNTINTRDYILKLKSDTL 92
+A + LV V + +A+Q+ H+V+ + V + +T ++K+++D L
Sbjct: 9 FANHSLVSKVIEKAVAEQLTKHIVSNNLDVSLQSSYKKFHSTETALIKVQNDIL 62
>SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 726
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 13 HSQACLNTSLSIRQEIQRFESVHPSI 38
+ QA L+ + +R+ IQRFE + P I
Sbjct: 114 NEQAALDVLVFVREAIQRFEQLKPVI 139
>SB_38521| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 506
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 60 HVVAIEVTVCHHEAKMNTINTRD 82
H + ++V VCH NTINT +
Sbjct: 305 HNMKLQVHVCHSATAHNTINTHN 327
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 23 SIRQEIQRFESVHPSIYALYDLVELVPDPLLAQQIRDHVVAIEVTVCHHEAKMNTINTRD 82
S++Q + + + I + ++ D L A + V +E + ++ MNT+NTR
Sbjct: 985 SLKQCVSQLNAFEEGIEEELEWMDKALDALAAYKNLSTVEEVEQELSKYKETMNTLNTRW 1044
Query: 83 YILKLKSD 90
+++ D
Sbjct: 1045 KVVRTGVD 1052
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 44 LVELVPDPLLAQQIRDHVVAIEVTVCHHEAKMNTI 78
L +++PDP ++ IR+ + V V H + ++++
Sbjct: 761 LKKVIPDPAFSESIRNATDVVTVYVFHEPSLLSSL 795
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 25.0 bits (52), Expect = 8.4
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 4 YRGNMCSRQHSQACLNTSLSIRQEIQRFESVHP 36
YR SRQH + NTS S R ++ +HP
Sbjct: 323 YRALQRSRQHKPSSRNTSRS-RSPVRSRSPIHP 354
>SB_22760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 570
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 3 GYRGNMCSRQHSQACLNTSLSIRQEIQR 30
GY G C+R+ S LN S IR + +
Sbjct: 235 GYEGQDCTRESSSVWLNGSGYIRYNVAK 262
>SB_32688| Best HMM Match : PAZ (HMM E-Value=7.7)
Length = 665
Score = 25.0 bits (52), Expect = 8.4
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 35 HPSIYALYDLVELVPDPLLAQQIRDHVVAIEVTVCHHEAK 74
HP+ + + LV P + R+H +A+ VT+ H K
Sbjct: 356 HPTKQPNHSIALLVTIPRHPMKQRNHTIALLVTIPRHTMK 395
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.134 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,847,629
Number of Sequences: 59808
Number of extensions: 83370
Number of successful extensions: 289
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 33
length of query: 93
length of database: 16,821,457
effective HSP length: 70
effective length of query: 23
effective length of database: 12,634,897
effective search space: 290602631
effective search space used: 290602631
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)
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