GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002386-TA|BGIBMGA002386-PA|undefined
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    29   5.2  
03_02_0956 + 12700507-12700540,12700640-12700676,12700792-127010...    29   6.9  

>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 289 HHEEEHQHIGSHDDHH 304
           HH+  H+H  SH DHH
Sbjct: 539 HHDHRHRHGHSHGDHH 554


>03_02_0956 +
           12700507-12700540,12700640-12700676,12700792-12701002,
           12701085-12701246,12701897-12702016,12702103-12702525
          Length = 328

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 286 PVFHHEEEHQHIGSHDDHHGFKQHNDD 312
           P+  H   HQH G H  HH F    DD
Sbjct: 280 PIELHSILHQHHGGHHHHHRFDTVPDD 306


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,498,347
Number of Sequences: 37544
Number of extensions: 98236
Number of successful extensions: 376
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 4
length of query: 333
length of database: 14,793,348
effective HSP length: 82
effective length of query: 251
effective length of database: 11,714,740
effective search space: 2940399740
effective search space used: 2940399740
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)