GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002386-TA|BGIBMGA002386-PA|undefined
         (333 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.3  
SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)                  29   4.0  
SB_20072| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)           29   7.0  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   28   9.3  
SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 3/26 (11%)

Query: 286 PVFHHEEEHQHIGSHDDHHGFKQHND 311
           P  HH  +H H   HD HH   QH+D
Sbjct: 3   PNHHHHHDHHH---HDHHHHDHQHHD 25



 Score = 28.7 bits (61), Expect = 7.0
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 289 HHEEEHQHIGSHDDH-HGFKQHND 311
           HH + H H   H DH H   QH+D
Sbjct: 12  HHHDHHHHDHQHHDHQHHDHQHHD 35



 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 289 HHEEEHQHIGSHDDH-HGFKQHND 311
           HH + H H   H DH H   QH+D
Sbjct: 7   HHHDHHHHDHHHHDHQHHDHQHHD 30


>SB_44681| Best HMM Match : DUF1109 (HMM E-Value=0.85)
          Length = 377

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 288 FHHEEEHQHIGS---HDDHHGFKQHNDD 312
           FH +E H H+     HDD+H +  H DD
Sbjct: 72  FHIDEPHYHVIEPHYHDDYHYYDHHYDD 99


>SB_20072| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 13/27 (48%), Positives = 16/27 (59%)

Query: 29 QLEPKKQDKRGLSEYYGSYDEHGGGHE 55
          Q EP ++DKR  S + GS    GGG E
Sbjct: 43 QFEPGERDKRNSSIFLGSNKNEGGGTE 69


>SB_23620| Best HMM Match : Pentapeptide_2 (HMM E-Value=0.74)
          Length = 483

 Score = 28.7 bits (61), Expect = 7.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 193 IHYPVKVPVDNPIPVHVDKPVPVH 216
           +  P +VPV  P+PV V  PVP+H
Sbjct: 221 VRVPFRVPVRVPVPVRV--PVPIH 242


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 196  PVKVPVDNPIPVHVDKPVPV 215
            PV VPV  P+P+H   P+P+
Sbjct: 1095 PVPVPVRVPVPMHQQSPLPM 1114


>SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 290 HEEEHQHIGSHDDHHGFKQHNDD 312
           H+++H H    DD H    H+DD
Sbjct: 117 HDDDHHHHDDDDDDHDDDDHDDD 139


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,098,959
Number of Sequences: 59808
Number of extensions: 111128
Number of successful extensions: 468
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 436
Number of HSP's gapped (non-prelim): 37
length of query: 333
length of database: 16,821,457
effective HSP length: 82
effective length of query: 251
effective length of database: 11,917,201
effective search space: 2991217451
effective search space used: 2991217451
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)