GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002386-TA|BGIBMGA002386-PA|undefined
         (333 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    33   0.21 
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical pr...    29   4.6  
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   8.1  

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 192 IIHYPVKVPVDNPIPVHVDKPVPV 215
           I H PV VPV  P+P+ V  PVPV
Sbjct: 153 IQHVPVPVPVQVPVPIRVPVPVPV 176


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 289 HHEEEHQHIGSHDDHHG 305
           HH + H H G H  HHG
Sbjct: 51  HHHDSHHHGGHHGGHHG 67


>Z48783-4|CAA88698.1|  359|Caenorhabditis elegans Hypothetical
           protein F33H1.3 protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 289 HHEEEHQHIGSHDDHHGFKQHNDD 312
           HH   H H  SH +  GF+ H+++
Sbjct: 248 HHHHHHPHASSHYNPMGFQNHHEE 271


>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
            C26C6.1a protein.
          Length = 1883

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 290  HEEEHQHIGSHDDHHGFKQH 309
            H +  QH+  H DHH  +QH
Sbjct: 1686 HHQHPQHMQQHHDHHPHQQH 1705


>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
            protein C26C6.1a protein.
          Length = 1883

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 290  HEEEHQHIGSHDDHHGFKQH 309
            H +  QH+  H DHH  +QH
Sbjct: 1686 HHQHPQHMQQHHDHHPHQQH 1705


>Z72503-5|CAI79155.1|  513|Caenorhabditis elegans Hypothetical
           protein C26C6.1b protein.
          Length = 513

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 290 HEEEHQHIGSHDDHHGFKQH 309
           H +  QH+  H DHH  +QH
Sbjct: 316 HHQHPQHMQQHHDHHPHQQH 335


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 11/25 (44%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 286 PVFH-HEEEHQHIGSHDDHHGFKQH 309
           P  H H  EH H  +H  HHG   H
Sbjct: 452 PAHHGHHGEHHHAPAHHGHHGEHHH 476


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.141    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,179
Number of Sequences: 27539
Number of extensions: 83116
Number of successful extensions: 423
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 364
Number of HSP's gapped (non-prelim): 60
length of query: 333
length of database: 12,573,161
effective HSP length: 82
effective length of query: 251
effective length of database: 10,314,963
effective search space: 2589055713
effective search space used: 2589055713
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)