GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002385-TA|BGIBMGA002385-PA|undefined
         (354 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    32   0.71 
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    31   1.6  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 31.9 bits (69), Expect = 0.71
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 286 KHIPYPVEKAVPFPVNIPVDRPYPVHI 312
           +H+P PV   VP P+ +PV  P P  +
Sbjct: 154 QHVPVPVPVQVPVPIRVPVPVPVPTPV 180


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 288 IPYPVEKAVPFPVNIPVDRPYPVHIEKHVPV 318
           +P PV + VP P+ +P+  P P+ +   VPV
Sbjct: 15  VPAPVPQPVPVPMPMPMPMPMPMPVPVPVPV 45



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 289 PYPVEKAVPFPVNIPVDRPYPVHIEKHVPVHI 320
           P PV   VP PV +P+  P P+ +   VPV +
Sbjct: 12  PVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPV 43


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 286 KHIPYPVEKAV--PFPVNIPVDRPYPVHIEKHVPVHIEK 322
           KH P P  K +  P P+ IP   P+P  + K +P H  K
Sbjct: 189 KHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPMPKHKPK 227


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.142    0.441 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,133
Number of Sequences: 27539
Number of extensions: 57000
Number of successful extensions: 202
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 58
length of query: 354
length of database: 12,573,161
effective HSP length: 82
effective length of query: 272
effective length of database: 10,314,963
effective search space: 2805669936
effective search space used: 2805669936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)