GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002384-TA|BGIBMGA002384-PA|undefined
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    26   6.6  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   6.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 117  YPVKVAVPQPYEVVKHVPYHVKEYVKV 143
            Y +K+ VP P+  ++H P HV  Y ++
Sbjct: 2322 YSLKLDVPLPFFALEHRPTHVISYTEL 2348


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 43  GYGYGIDGLDVGYIGHGQGLGGAYNYVD--GGYSSGYGLNFGGH 84
           G+G G  G + G  G G G GG    +   GG   G+G   GGH
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGH 268


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 107 VPYPVEKHVPYPVKVAVPQPYEVVKHVPYHVKEYVK 142
           + YPV +  P  V   V Q YEV   V YH K+ +K
Sbjct: 304 ITYPVAETAPSLVVKVVNQDYEV--KVFYHYKDNIK 337


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 41  NLGYGYGIDGLD-VGYIGHGQGLGGAYNYVDGGYSSGYGLNFGG 83
           N G G G+ G +     G GQ  GG +     G  +G+G + GG
Sbjct: 346 NTGTGTGLFGSNNATNTGTGQTTGGLFGGAATGTGTGFGSSTGG 389


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.145    0.457 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,089,745
Number of Sequences: 5004
Number of extensions: 39038
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 6
length of query: 337
length of database: 2,362,478
effective HSP length: 73
effective length of query: 264
effective length of database: 1,997,186
effective search space: 527257104
effective search space used: 527257104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)