GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002383-TA|BGIBMGA002383-PA|IPR009030|Growth factor,
receptor, IPR002919|Protease inhibitor I8, cysteine-rich trypsin
inhibitor-like, IPR006210|EGF, IPR003341|Cysteine rich repeat,
tripleX, IPR013032|EGF-like region
         (339 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    33   0.004
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.085
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   5.6  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   9.7  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    21   9.7  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   9.7  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   9.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 32.7 bits (71), Expect = 0.004
 Identities = 48/203 (23%), Positives = 75/203 (36%), Gaps = 39/203 (19%)

Query: 159 CPDGYYNDPVECSPRCERCVNGTCTEPG---------LCTCDPGYKNIDDVCVPKCLDCR 209
           CP G+    + C    E C   +C   G         +CTC PG+   +  C  +   C 
Sbjct: 11  CPLGFSG--INCQTNDEDCTETSCMNGGTCIDGINSYICTCKPGFTGSN--CQNRINLCD 66

Query: 210 NGECVAPNDCLCHDNYAMSNGTCAPVCRRACTNGACSE-PDKCT---CDDGYR-LSPEDP 264
           +  C+  N   C D+   ++ TC   C    T   C E  D C+   C++    +  ++ 
Sbjct: 67  SSPCL--NGATCQDH--TTHYTCH--CPYGYTGKDCGEYVDWCSTNPCENQATCVQNKNQ 120

Query: 265 FVCL-------PVCSERCVNSHCSSPNTCTCFKDYERNDT-----NSNVCYKKCDGACEN 312
           + CL        VC    V+   ++       K    N T     NS+ C+  C      
Sbjct: 121 YQCLCGVGWTGKVCDVEMVSCKDAALRKVVPLKKLCNNGTCEDIGNSHRCH--CSDGYSG 178

Query: 313 GRCSLDGACECDSGYILSNGTCI 335
             C  +   ECDS    + GTC+
Sbjct: 179 SYCQTE-INECDSAPCQNGGTCL 200


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.085
 Identities = 38/167 (22%), Positives = 59/167 (35%), Gaps = 16/167 (9%)

Query: 132  YSSCTDFNVCTCVNNTIALNGSQCAPVCPDGYYNDPVE--CSPRCE-RCVNGTCTEPGLC 188
            + SC+ F VC        +NG      C  G + +P E  C  + + +CV          
Sbjct: 1215 HESCSSFYVC--------VNGHLVPQNCAPGLHYNPEEHMCDWKYKVKCVGRKQLAQKYQ 1266

Query: 189  TCDPGYKNIDDVCVPKCLDCRNGECVAPNDCLCHDNYAMSNGTCAPVCRRACTNGACSEP 248
                G       C         G+C     CL    Y + N  CAP          C  P
Sbjct: 1267 LPKMGGPQPYSACSENAFAAYPGDCTRYLHCLW-GKYEVFN--CAPGLHWDNNKNICDWP 1323

Query: 249  DKCTCDDGYRLSPED-PFVCLPVCSERCVNSHCS-SPNTCTCFKDYE 293
            +K TCD    ++  D      P  S   V++  S +P + T + +++
Sbjct: 1324 EKATCDGTSNVNVVDIVTTAKPAQSTTSVSTTTSWNPGSTTNYPEWQ 1370


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 26  DGKGVATVDVPVIRQRTRLVYNKKRC 51
           D   V T D   +  + + +YN+K+C
Sbjct: 772 DSCTVCTCDAKYLEIKCKRIYNEKQC 797


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 118 GHCVEPTCSPACDSYSSCTD 137
           G+C +P   P C+ Y    D
Sbjct: 209 GNCEDPEDVPGCEDYYKDVD 228


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
           protein 4 protein.
          Length = 133

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 291 DYERNDTNSNVCYKKCDGACENGRCSLDG 319
           D E    N  +     D   E GRCS DG
Sbjct: 34  DLENVVKNERLLKSYVDCLLEKGRCSPDG 62


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)

Query: 298 NSNVCYKKCDGACEN 312
           N  V   KC+G+C++
Sbjct: 51  NGEVAVNKCEGSCKS 65


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 274 RCVNSHCSSPNTCTCFKDYERNDTNSNVCY 303
           +C+ S  SS  TC    ++  N T S + +
Sbjct: 234 KCITSSLSSLYTCIAGYEFNANFTISYILF 263


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,269
Number of Sequences: 317
Number of extensions: 5431
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 7
length of query: 339
length of database: 114,650
effective HSP length: 57
effective length of query: 282
effective length of database: 96,581
effective search space: 27235842
effective search space used: 27235842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)