GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002383-TA|BGIBMGA002383-PA|IPR009030|Growth factor,
receptor, IPR002919|Protease inhibitor I8, cysteine-rich trypsin
inhibitor-like, IPR006210|EGF, IPR003341|Cysteine rich repeat,
tripleX, IPR013032|EGF-like region
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    31   0.31 
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    31   0.31 
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    27   5.1  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    26   8.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 20/81 (24%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 112 PLVLRRGHCVEPTCSPACDSYSSCTDFNVCTCVNNTIALNGS--QCAPVCPDGYYNDPVE 169
           PL+   G C  P C+   + +  C   ++    +N   +N    +C  VC +        
Sbjct: 295 PLLCHPGPC--PPCTATVEKFCLCGKESIHARCSNISKVNTEPFRCENVCDELLPCGEHT 352

Query: 170 CSPRCERCVNGTCTEPGLCTC 190
           C  RC   + G C EP    C
Sbjct: 353 CKKRCHSGLCGACFEPINAKC 373


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 36/161 (22%), Positives = 51/161 (31%), Gaps = 6/161 (3%)

Query: 181 TCTEPGLCTCDPGYKNIDDVCVPKCLDCRNGECVAPNDCLCHD--NYAMSNGTCAPVCRR 238
           +CT P   T  P   +I   C     D     C     C   +  +Y   NG C    + 
Sbjct: 772 SCTLPISYTSTPTTTSISGTCNGATFDASLYVCDGTVLCPIVNGVSYQNCNGACYNPSQY 831

Query: 239 ACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERNDTN 298
            C NGA       +       +P       P  +     +   S     C  +Y   D +
Sbjct: 832 GCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTTTAQSTGMQLCGSNYY--DAS 889

Query: 299 SNVCYKK--CDGACENGRCSLDGACECDSGYILSNGTCIRN 337
           S  C     C         S +GAC   S Y+ S+G+   N
Sbjct: 890 SYYCDNDQLCPIIDGVDYLSCNGACYNPSQYVCSDGSLSPN 930



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 242 NGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERNDTNSNV 301
           NGAC  P +  C DG  LSP        V + +   +   +P T T       + T++NV
Sbjct: 911 NGACYNPSQYVCSDG-SLSPN------TVTTTKATTTFTPTPTTTTTPTPTTTSATSTNV 963


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 271 CSERCVNSHCSSPNTCTCFKDYERNDTNSNVCYK 304
           C E C N+ C    TC   K    +D     CY+
Sbjct: 331 CGEDCENNPCCDGKTCKLTKGSLCDDQQDACCYQ 364


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/66 (21%), Positives = 26/66 (39%)

Query: 30  VATVDVPVIRQRTRLVYNKKRCRGKTNSGSCVITESYVSIEKSQSCKTGWIYEAKTDSCV 89
           V + +   +R  T + Y    C+    +G C   ++   +   +  K GW  + + DS  
Sbjct: 169 VLSSNASTVRMNTIIDYQPDVCKDYKLTGYCGYGDTCKFLHMREDYKAGWQLDREWDSVQ 228

Query: 90  PKCTSG 95
            K   G
Sbjct: 229 EKYKKG 234


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.137    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,833,909
Number of Sequences: 5004
Number of extensions: 83019
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 7
length of query: 339
length of database: 2,362,478
effective HSP length: 73
effective length of query: 266
effective length of database: 1,997,186
effective search space: 531251476
effective search space used: 531251476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)