GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002383-TA|BGIBMGA002383-PA|IPR009030|Growth factor,
receptor, IPR002919|Protease inhibitor I8, cysteine-rich trypsin
inhibitor-like, IPR006210|EGF, IPR003341|Cysteine rich repeat,
tripleX, IPR013032|EGF-like region
         (339 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.31 
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    25   0.94 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    25   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.6  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   8.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   8.8  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 14/79 (17%)

Query: 186 GLCTCDPGYKNIDDVCVPKCLDCRNGECVAPNDCLCHDNYAMSNGTCAPVCRRACTNGAC 245
           G C C PGY+   DV   +C +C  G+         H+  + S   C P   ++   G  
Sbjct: 245 GGCHCKPGYQA--DVEKQECTECPIGK-------FKHEAGSHSCEAC-PAHSKSSDYGFT 294

Query: 246 SEPDKCTCDDGYRLSPEDP 264
               +C CD GY  + +DP
Sbjct: 295 ----ECRCDPGYFRAEKDP 309


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 229 NGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCV 276
           NG C+ +C  A    + S    C C DG +L   D  +C+   S   V
Sbjct: 40  NGHCSHLCLPAPRINSKSPLLSCACPDGLKLL-SDGLMCVEKVSTTIV 86


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 229 NGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCL 268
           NG C+ +C  A    + S    C C DG +L   D  +C+
Sbjct: 40  NGHCSHLCLPAPRINSKSPLLSCACPDGLKLL-SDGLMCV 78


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 153 SQCAPVCPDGYYNDPVECSPRCERCVNGTCTEPGLCTCDPGYKNIDDVCVPKCLDCRNGE 212
           S C+  C  G     V     C  C N  CT+         Y+  D   V +C+ CR G 
Sbjct: 585 SVCSLPCEVGQAKKYVAGEQCCWHCFN--CTQ---------YQIRDHKDVTQCISCRQGT 633

Query: 213 CVAPNDCLCHD 223
                   C D
Sbjct: 634 VPDETHSACRD 644


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 294 RNDTNSNVCYKKCDGACE 311
           R    SN  + +CDG C+
Sbjct: 34  RGKCPSNEIFSRCDGRCQ 51


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 294 RNDTNSNVCYKKCDGACE 311
           R    SN  + +CDG C+
Sbjct: 34  RGKCPSNEIFSRCDGRCQ 51


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.477 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,995
Number of Sequences: 429
Number of extensions: 6360
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 339
length of database: 140,377
effective HSP length: 58
effective length of query: 281
effective length of database: 115,495
effective search space: 32454095
effective search space used: 32454095
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)