GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002380-TA|BGIBMGA002380-PA|undefined
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    29   1.0  
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    27   3.1  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   7.1  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 6/51 (11%)

Query: 82  VVHLRFYTEYLWIV--DFSL----YTAIVYIMSEVLRRKQNKVFVLNFNFA 126
           V+HL F   Y WI   D++L      A V +M   ++R+   +FV  F+ A
Sbjct: 96  VIHLFFILNYKWIYRKDYNLCLNQKIAFVLVMLHFMKREYESIFVHRFSLA 146


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 41  PKERSKGKKGGKYESNGKPETFHVPRSLEIQLETAPVTALD 81
           PK+  KGKK  K E + +P+    P+  +   E   VT LD
Sbjct: 104 PKKGKKGKKSKKVEEDDEPQEIESPQGPK---ELTAVTELD 141



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 46  KGKKGGKYESNGKPETFHVPRSLEIQLET 74
           KGKKG K ++N + E    P   E++++T
Sbjct: 151 KGKKGKKAQNNNESEAAAPPEIPEVRVKT 179


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 213 QAYLDIAQRRLDVQKKEAGRITNIDLQKK-VASVFYYLCVVALQYICP 259
           Q YLD+     DV+ KE   I    + KK  +S FY  C++  + I P
Sbjct: 108 QRYLDLGYGIEDVKIKENEDIVKSKVGKKPTSSDFYIPCLIKPKIITP 155


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,241
Number of Sequences: 5004
Number of extensions: 52807
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 5
length of query: 356
length of database: 2,362,478
effective HSP length: 74
effective length of query: 282
effective length of database: 1,992,182
effective search space: 561795324
effective search space used: 561795324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)