GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002380-TA|BGIBMGA002380-PA|undefined
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0139 + 12247051-12247155,12247250-12247327,12247412-122475...    32   0.61 
09_03_0027 - 11690348-11690828,11694815-11695749                       29   4.3  
04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200     29   7.5  
04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497     29   7.5  

>06_02_0139 +
           12247051-12247155,12247250-12247327,12247412-12247519,
           12247882-12247944,12248024-12248185,12248424-12248624,
           12248663-12248725,12248915-12249244,12249870-12250034,
           12250110-12251078
          Length = 747

 Score = 32.3 bits (70), Expect = 0.61
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 39  GVPKERSKGKKGGKYESNGKPETFHVPRSLEIQLETAPVTA 79
           G+  E   G  GGK  + G P+  H+ R  E +LE   +T+
Sbjct: 703 GLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELEVCSLTS 743


>09_03_0027 - 11690348-11690828,11694815-11695749
          Length = 471

 Score = 29.5 bits (63), Expect = 4.3
 Identities = 10/28 (35%), Positives = 23/28 (82%)

Query: 101 TAIVYIMSEVLRRKQNKVFVLNFNFALP 128
           +A++++++ VLRR++  V++LN++  LP
Sbjct: 23  SALLFVVAVVLRRRRRPVYLLNYSCHLP 50


>04_04_1014 - 30111658-30112456,30112777-30113054,30114060-30114200
          Length = 405

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 183 RMTSQAFDTLRIVLVVCTAALRVALMPRQLQAYLDIAQRRLDVQKKEAGRITNIDLQKKV 242
           R+    F+T    L+V        L+P  +   L+  Q   D Q+KEA ++    L K++
Sbjct: 83  RLAPLMFETPSGQLLVQILQSHPHLLPATVDQQLENLQSEKDAQEKEASKVPQDLLYKRI 142

Query: 243 ASV 245
           A V
Sbjct: 143 AEV 145


>04_04_1007 - 30050955-30051753,30052074-30052351,30053357-30053497
          Length = 405

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 183 RMTSQAFDTLRIVLVVCTAALRVALMPRQLQAYLDIAQRRLDVQKKEAGRITNIDLQKKV 242
           R+    F+T    L+V        L+P  +   L+  Q   D Q+KEA ++    L K++
Sbjct: 83  RLAPLMFETPSGQLLVQILQSHPHLLPATVDQQLENLQSEKDAQEKEASKVPQDLLYKRI 142

Query: 243 ASV 245
           A V
Sbjct: 143 AEV 145


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,715,040
Number of Sequences: 37544
Number of extensions: 307531
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 4
length of query: 356
length of database: 14,793,348
effective HSP length: 83
effective length of query: 273
effective length of database: 11,677,196
effective search space: 3187874508
effective search space used: 3187874508
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)