GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002380-TA|BGIBMGA002380-PA|undefined
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20616| Best HMM Match : Rhomboid (HMM E-Value=5)                    32   0.62 
SB_20318| Best HMM Match : VPS9 (HMM E-Value=7.2)                      31   1.4  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.3  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   3.3  
SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)          29   5.8  
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_32483| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_20616| Best HMM Match : Rhomboid (HMM E-Value=5)
          Length = 359

 Score = 32.3 bits (70), Expect = 0.62
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 5/47 (10%)

Query: 232 RITNIDLQKKVASVFYYLCVVALQYICPVIMMLYLALMYKTLGGHAW 278
           R+T   LQ+ + + +YYL   AL  + P     +L L Y++LG  AW
Sbjct: 8   RVTKKQLQRCLPNAYYYLFYAALGSLLP-----FLTLYYRSLGLSAW 49


>SB_20318| Best HMM Match : VPS9 (HMM E-Value=7.2)
          Length = 230

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 102 AIVYIMSEVLRRKQNKVFVLNFNFALPFILVLLWVRPIT--RHYLTARVFSGMEKPFVAN 159
           A+ Y +  +LRR  N + +L FN A  +    LW+      R+  T R    +E+ F   
Sbjct: 133 ALAYWLPHILRRNDNAMQILGFNDANNYSTRALWIDVFNRLRNRFTHRSMYFLERDFTHM 192

Query: 160 TACI 163
             C+
Sbjct: 193 RQCL 196


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 29   PDNNELKNLAGVPKERSKGKKGGKYESNGKPETFHVPRSLEIQLETA 75
            P+   L     VP+  +  +   K E+ G PET   P++  +Q  TA
Sbjct: 2334 PETTALPKTTAVPETTTPPETTAKPETTGAPETTSAPKTTAVQEATA 2380


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 29   PDNNELKNLAGVPKERSKGKKGGKYESNGKPETFHVPRSLEIQLETA 75
            P+   L     VP+  +  +   K E+ G PET   P++  +Q  TA
Sbjct: 2877 PETTALPKTTAVPETTTPPETTAKPETTGAPETTSAPKTTAVQEATA 2923


>SB_45929| Best HMM Match : ANF_receptor (HMM E-Value=4.8e-24)
          Length = 1001

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 13/55 (23%), Positives = 26/55 (47%)

Query: 70  IQLETAPVTALDVVHLRFYTEYLWIVDFSLYTAIVYIMSEVLRRKQNKVFVLNFN 124
           I  +T     + V H R   E +W++   +Y A+V +    L  +  K+++ + N
Sbjct: 582 ITAKTFQAEVISVGHCRSENELMWLLIILIYKALVLLFGLFLAWQTRKLYIKSLN 636


>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 183 RMTSQAFDTLRIVLVVCTAALRVALMPRQLQAYLDIAQRRLDVQKKEAGRITNIDLQKKV 242
           + ++ A  T+R   +  T  L++ L P++    +     R+D       R+T  DL +K 
Sbjct: 27  KFSAHALTTVRTATLTLTGTLQIRLQPKKFHRTMKPGAPRIDF-----SRMTQPDLVEKF 81

Query: 243 ASVF 246
           A VF
Sbjct: 82  AEVF 85


>SB_32483| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 242

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 23  LYRYLYPDNNELKNLAGVPKERSKGK 48
           L RYL+P + +LK + G P   +KGK
Sbjct: 126 LVRYLHPTDEQLKAMIGKPVNGTKGK 151


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,043,416
Number of Sequences: 59808
Number of extensions: 353468
Number of successful extensions: 1116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1089
Number of HSP's gapped (non-prelim): 28
length of query: 356
length of database: 16,821,457
effective HSP length: 83
effective length of query: 273
effective length of database: 11,857,393
effective search space: 3237068289
effective search space used: 3237068289
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 61 (28.7 bits)