GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002380-TA|BGIBMGA002380-PA|undefined
         (356 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical...    67   2e-11

>AL110500-19|CAB60433.2|  468|Caenorhabditis elegans Hypothetical
           protein Y87G2A.13 protein.
          Length = 468

 Score = 67.3 bits (157), Expect = 2e-11
 Identities = 48/164 (29%), Positives = 73/164 (44%), Gaps = 5/164 (3%)

Query: 2   VSVIQKLGNYSFAKWLLCSQGLYRYLYPDNNELKNLAGVPKERSKGKKGGKYESNGKPET 61
           +++I KL   +    +  + GLYR+L P N ELK L    KE+   +   K   +   E 
Sbjct: 15  ITLISKLVRRANFIDIFVTNGLYRFLAPSNQELKALLPPTKEKMNQRNRRKKREDEAAEG 74

Query: 62  FHVPRSLEIQLETAPVTALDVVHLRFYTEYLWIVDFSLYTAIVYIMSEVLR--RKQNKVF 119
           F +P+S   QL   PV   D+V    YT   W+         VY +SEV       N+ F
Sbjct: 75  FSLPKSSPFQLNLYPVDVKDLVQFEMYTSLHWLCLCIPVCLFVYTLSEVYNYIMPDNRDF 134

Query: 120 VLNFNFALPFILVLLWVRPITRHYLTARVFSGMEKPFVANTACI 163
            ++  F L  I+ +L V      YL + V    E+ F+ +  C+
Sbjct: 135 NVSIVFMLVVIMFVLQVLTALSSYLVSSV---DERGFMISIGCL 175



 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 18/171 (10%)

Query: 184 MTSQAFDTLRIVLVVCTAALRVALMPRQLQAYLDIAQRRLDVQKKEAGRITNIDLQKKVA 243
           M+    D LRI +++     +       LQA+L++A  ++   + EAG++ N  +Q  + 
Sbjct: 305 MSLDQLDILRIYMIIGWVLSKFLTRVSHLQAHLNLAYDKVAEMRAEAGKVKNYTIQAMIY 364

Query: 244 SVFYYLCVVALQYICPVIMMLYLALMYKTLGGHAWSSLLYEXXXXXXXXXXXXXXXXXXX 303
             + YLC  ALQY  P ++ L  AL+ KT G  +W                         
Sbjct: 365 RYYRYLCCAALQYFGPAVLALLFALLLKTTGNLSW-----------------IGAPTPQS 407

Query: 304 GAEQYQLAWEN-LKMVFTTEVCRGVLGFATWWCSFAWFVTTALGAAYQSYF 353
             E   LA    ++ VF   +CR    F         F    LG  Y SYF
Sbjct: 408 NTELNTLALSGPIRFVFDASICRAFFSFLLVVTILINFTLQLLGVVYHSYF 458


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.138    0.429 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,540,781
Number of Sequences: 27539
Number of extensions: 278505
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 804
Number of HSP's gapped (non-prelim): 2
length of query: 356
length of database: 12,573,161
effective HSP length: 82
effective length of query: 274
effective length of database: 10,314,963
effective search space: 2826299862
effective search space used: 2826299862
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 60 (28.3 bits)