GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002379-TA|BGIBMGA002379-PA|IPR008603|Dynactin p62
         (430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    28   2.2  
SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   2.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    28   2.9  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    27   5.1  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    27   5.1  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   8.9  

>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 206 PIAKLLSVKRSQRCRECDHNLTKPEYNPGSIKFKIELLAFYHIPEVKIISYEPMKAGENS 265
           P    LS+ RSQ  RE +     P   P    FK +     H+P+ + +SY P ++ + S
Sbjct: 515 PPVPRLSITRSQVSREPEKPEEIPSVPPLPSNFKDK----GHVPQQRSVSYTPKRSSDTS 570

Query: 266 TVL 268
             L
Sbjct: 571 ESL 573


>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 145 PXXXXXXXXIIAKFVPSQASAEVEELPEDYFTKEVNLNQITSMPQRLLSPEWQPTDVSRL 204
           P        I+ KF   +ASA  E   +D+    + LN++   P    S E       RL
Sbjct: 105 PASMETINLIVEKFEKIRASATEET--KDF----IKLNEVNEFPSSDTSLESNQDGFERL 158

Query: 205 HPIAKLL 211
           HP+A+ L
Sbjct: 159 HPLAERL 165


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 214 KRSQRCRECDHNLTKPEYNPGSIKFKIELLAFYHIPEVKI-ISYEPMKAGENSTVLLKLS 272
           +R++R  E      K E     +K   +LL    I    I IS +  ++  +   LLK S
Sbjct: 197 RRAERAAEAQRVAGK-EQLANILKHSTDLLEA-RIERANINISAQTSESAVDWNYLLKTS 254

Query: 273 NP--TAHEMTLCLMNPEDIPQVDNEEEQLENSLEKSLTLDKE 312
           +   +  E+ L   NP+ I  ++ EEE  E S ++ L+ + E
Sbjct: 255 DDLLSVDELKLKYSNPDLIKNIEREEEAEETSDDEPLSSEDE 296


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 257 EPMKAGENSTVLLKLSNPTAHEMTLCLMNPEDIPQVDNEEEQLENSLEKSLTLDKES 313
           E   AG+ S++ + +SN  +H  ++C  + + +PQ D+    + N     L  DKES
Sbjct: 108 EGASAGDESSLRVNISNLYSHPESVC--SAKLMPQDDSCVATVGNYHNDVLVFDKES 162


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 2   PSSEARLKKNRCSSCFDC----PSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYL 57
           P+  AR + N   S FD     P  Y   S  +  +   Q      GK+EN + K   YL
Sbjct: 474 PTYTARHRSNSAGSRFDAYEPIPQLYTHFSHSSECLSVNQDTELL-GKIENDNSKSNDYL 532

Query: 58  ACFNCRWTSRDV 69
           +  N R  SR +
Sbjct: 533 SVRNTRPRSRSL 544


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 161 SQASAEVEELPEDYFTKEVNLNQITSMPQRLLSPE 195
           +Q+ + V E+P+ +F  +  L +   MP R+L+PE
Sbjct: 831 NQSISLVFEVPKSHFVHKSMLLRGVKMPNRVLTPE 865


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,329
Number of Sequences: 5004
Number of extensions: 62748
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 142
Number of HSP's gapped (non-prelim): 6
length of query: 430
length of database: 2,362,478
effective HSP length: 75
effective length of query: 355
effective length of database: 1,987,178
effective search space: 705448190
effective search space used: 705448190
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)