Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002379-TA|BGIBMGA002379-PA|IPR008603|Dynactin p62
(430 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0029 - 288676-289287,289441-289733,289842-290031 33 0.44
07_02_0032 - 12037507-12038435,12038475-12038586,12038912-120391... 30 3.1
02_05_0287 - 27525722-27525812,27525927-27526057,27526945-275270... 30 4.1
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636... 29 7.2
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 29 7.2
10_01_0106 + 1317848-1318202,1318208-1318872,1318969-1319850,131... 29 7.2
07_01_1139 - 10684647-10685837,10685877-10686251,10686351-106865... 29 7.2
04_04_0352 + 24619621-24619757,24620102-24620411,24621022-246214... 29 7.2
04_01_0182 - 2058396-2058456,2058623-2058660,2058748-2058850,205... 29 7.2
01_01_0374 - 2919425-2919529,2919645-2920319 29 9.5
>06_01_0029 - 288676-289287,289441-289733,289842-290031
Length = 364
Score = 33.1 bits (72), Expect = 0.44
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 154 IIAKFVPSQASAEVEELPEDYFTKEVNLNQITSMPQRLLSPEWQPTDVS 202
++ KFV SQ S + P D++T E ++ Q++ Q + + ++ T S
Sbjct: 308 VLDKFVASQLSNDATNKPADHYTDEGDILQVSDKQQEVAAADYASTSTS 356
>07_02_0032 -
12037507-12038435,12038475-12038586,12038912-12039199,
12039395-12039622
Length = 518
Score = 30.3 bits (65), Expect = 3.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 155 IAKFVPSQASAEVEELPEDYFTKEVNLNQITSMPQRLLSP 194
IA+ PS SA+ E LPE +E Q+ S PQR P
Sbjct: 214 IAREAPSSDSADKEVLPEKGVPQEYCDTQLLSFPQRSRKP 253
>02_05_0287 -
27525722-27525812,27525927-27526057,27526945-27527022,
27527080-27527186,27527302-27527380,27528001-27528096,
27528192-27528443,27528691-27528840,27528953-27529277,
27529373-27529584
Length = 506
Score = 29.9 bits (64), Expect = 4.1
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 201 VSRLHPIAKLLSVKRSQRCRECDHNLTKPEYNPGSIKFKIELLAF-YHIPEVKIISYEPM 259
V RL+ L +V + R C +L P S++ K + A + + K+ISYEP
Sbjct: 137 VLRLYGQENLRAVLLDETDRACRTSLASWAAQP-SVELKDSISAMIFDLTAKKLISYEPS 195
Query: 260 KAGEN 264
K+ EN
Sbjct: 196 KSSEN 200
>11_04_0179 +
14562288-14562860,14562874-14563489,14563529-14563658,
14563694-14564540
Length = 721
Score = 29.1 bits (62), Expect = 7.2
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 155 IAKFVPSQASAEVEELPEDYFTKEVNLNQITSMPQ--RLLSPE 195
IAK PS SA+ E+ PE +E ++ S PQ R L+PE
Sbjct: 401 IAKEAPSSDSADKEDQPEKTVPQEYCDTRLLSFPQRSRKLNPE 443
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 29.1 bits (62), Expect = 7.2
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 161 SQASAEVEELPEDYFTKEVNLNQITSMPQRL-LSPEWQPTDVS--RLHPIAKLLSVKR 215
+QAS ++E+ P ++ N++ + + + PEW PT+VS L+ + K+ +KR
Sbjct: 867 AQASQQIEK-PTRAYSDSSNMSSLNTFEDPAGIPPEWTPTNVSVHLLNLVDKVFQLKR 923
>10_01_0106 +
1317848-1318202,1318208-1318872,1318969-1319850,
1319856-1320200,1320286-1320294
Length = 751
Score = 29.1 bits (62), Expect = 7.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 155 IAKFVPSQASAEVEELPEDYFTKEVNLNQITSMPQRLLSP 194
I+K PS SA+ E PE+ +E ++ S PQR+ P
Sbjct: 389 ISKGAPSNDSADKEVQPENTVPQEYCDTRLLSFPQRMRKP 428
>07_01_1139 -
10684647-10685837,10685877-10686251,10686351-10686534,
10686699-10686895
Length = 648
Score = 29.1 bits (62), Expect = 7.2
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 155 IAKFVPSQASAEVEELPEDYFTKEVNLNQITSMPQRLLSP 194
IA+ VPS SA+ E PE +E Q+ S PQR P
Sbjct: 314 IAREVPSSNSADKEVRPEKTVLQEYCDTQLLSFPQRGRKP 353
>04_04_0352 +
24619621-24619757,24620102-24620411,24621022-24621429,
24621773-24622357
Length = 479
Score = 29.1 bits (62), Expect = 7.2
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 288 DIPQVDNEEEQLENSLEKSLTLDK 311
DI + D+EEEQ++ S E+ L LDK
Sbjct: 397 DIFETDSEEEQVQESKEQPLYLDK 420
>04_01_0182 -
2058396-2058456,2058623-2058660,2058748-2058850,
2059485-2059567,2059651-2059944,2060440-2060572,
2060660-2060735,2060867-2060997,2061112-2061214,
2061305-2061578,2061661-2061732
Length = 455
Score = 29.1 bits (62), Expect = 7.2
Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 6/154 (3%)
Query: 157 KFVPSQASAEVEELPEDYFTKEVNLNQITSMPQRLLSPEWQPTDVSRLHPIAKLLSVKRS 216
K P +V E+P D+ + NL Q + + QR+ E+ + + ++KL V+ +
Sbjct: 74 KLTPWTNVEQVNEVPADFPSHVFNLVQFSDLSQRVGMQEYFTDVIGMIIGVSKLAYVRMA 133
Query: 217 QRCRECDHN-LTKPEYNPGSIKFKI--ELLAFYHIPEVKIISYEPMKAGENSTVLLKLSN 273
+ + + + +K + E + V + + + G L+K N
Sbjct: 134 SKTSDTPKRVIALRDLANCEVKLVLWGEHALDFDADAVHSVGQDNVVVGIFVGTLMKAYN 193
Query: 274 PTAHEMTLC--LMNPEDIPQVDNEEEQLENSLEK 305
T + C +N EDIP+++ + L +S K
Sbjct: 194 KTLSGGSACKWYLN-EDIPEINQFFDSLGDSAPK 226
>01_01_0374 - 2919425-2919529,2919645-2920319
Length = 259
Score = 28.7 bits (61), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 19 CPSCYHTLSTRASLVQPRQQEGAG 42
CP C ++T SLV+P GAG
Sbjct: 132 CPVCKRKMATEVSLVEPDDVSGAG 155
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.131 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,959,254
Number of Sequences: 37544
Number of extensions: 402772
Number of successful extensions: 971
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 962
Number of HSP's gapped (non-prelim): 13
length of query: 430
length of database: 14,793,348
effective HSP length: 84
effective length of query: 346
effective length of database: 11,639,652
effective search space: 4027319592
effective search space used: 4027319592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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