GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002379-TA|BGIBMGA002379-PA|IPR008603|Dynactin p62
         (430 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)          40   0.004
SB_55052| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)                       29   7.3  

>SB_14361| Best HMM Match : Dynactin_p62 (HMM E-Value=0.00091)
          Length = 497

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 12/96 (12%)

Query: 160 PSQASAEVEELPEDYFTKEVNLNQ----------ITSMPQRLLSPEWQPTDVSRLHPIAK 209
           PS A+ +V+ LPE+Y+TK + L +          +  + QRL +PE+QP D+    P  +
Sbjct: 190 PSVATEDVDTLPEEYYTKPLVLERGLKMNVQSVIVPRISQRLANPEFQPGDIRHYVPRLR 249

Query: 210 LLSVKRSQRCRECDHNLTKPEYNPGSIKFKIELLAF 245
           +  V   +  +E    LT    NP     K+ LL +
Sbjct: 250 IAGVGSLECDKEGQVTLTLT--NPVENIVKVSLLPY 283



 Score = 35.5 bits (78), Expect = 0.084
 Identities = 13/28 (46%), Positives = 19/28 (67%)

Query: 76  VASGGWPERPNPFATQINQLLEYYKAIA 103
           V SGGW E+ NP   +I  L++YY+ +A
Sbjct: 70  VTSGGWQEQDNPVTKRIGTLVDYYRQLA 97


>SB_55052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 218 RCRECDHNLTKPEYNPGSIKFKIELLAFY-HIPEVKIISYEPMK 260
           RCRE  HNL   + NP  +KFK+E + F  ++     IS EP K
Sbjct: 96  RCRE--HNL---KLNPKKLKFKLERVTFLGYVLSADEISAEPEK 134


>SB_46512| Best HMM Match : TIL (HMM E-Value=1.3)
          Length = 382

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 123 KYLTLTDKTGLTGAMARNIAGLPXXXXXXXXI-IAKFVPSQASAEVEELPE-DYFTKEVN 180
           K+L + + T    ++A +IA           + +  ++ S  S  + EL   D  +++VN
Sbjct: 168 KFLRVMENTKQDDSLALDIASKAYIQRLSFAVPVLGYLMSTQSWPIAELQRIDRKSRKVN 227

Query: 181 LNQITSMPQRLLSPEWQP----TDVSRLHPIAKLLSV---KRSQRCRECDHNLTKPEYNP 233
             +    P R++    QP    T+  + +  +++ S    K + +  +  + L K +Y P
Sbjct: 228 HREWRQAPSRIVGTSVQPYGTCTNSQKQNTNSQMQSTYKHKANYKLAKAKYKLAKAKYKP 287

Query: 234 GSIKFKI 240
              K+K+
Sbjct: 288 AKAKYKL 294


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,799,232
Number of Sequences: 59808
Number of extensions: 483428
Number of successful extensions: 1150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 8
length of query: 430
length of database: 16,821,457
effective HSP length: 84
effective length of query: 346
effective length of database: 11,797,585
effective search space: 4081964410
effective search space used: 4081964410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)