Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002379-TA|BGIBMGA002379-PA|IPR008603|Dynactin p62
(430 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC026323-1|AAH26323.1| 460|Homo sapiens dynactin 4 (p62) protein. 254 6e-67
AK000299-1|BAA91066.1| 460|Homo sapiens protein ( Homo sapiens ... 254 6e-67
AF195120-1|AAF03896.1| 460|Homo sapiens dynactin p62 subunit pr... 254 6e-67
AL162085-1|CAB82417.1| 144|Homo sapiens hypothetical protein pr... 33 1.9
M19154-2|AAA50405.1| 413|Homo sapiens transforming growth facto... 32 3.4
AB124552-1|BAC99057.1| 917|Homo sapiens KIAA2038 protein protein. 31 5.9
>BC026323-1|AAH26323.1| 460|Homo sapiens dynactin 4 (p62) protein.
Length = 460
Score = 254 bits (621), Expect = 6e-67
Identities = 137/298 (45%), Positives = 185/298 (62%), Gaps = 19/298 (6%)
Query: 1 MPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLACF 60
MPS+EA+LKKNRC++CFDCP C HTLSTRA+ + + + + KK YYLAC
Sbjct: 58 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLTDDPAKTTM-----KKAYYLACG 112
Query: 61 NCRWTSRDVGIPDQPVASGGWPERPNPFATQINQLLEYYKAIALXXXXXXXXXXXXXFAI 120
CRWTSRDVG+ D+ VASGGW E NP ++N+L+EYY+ +A A
Sbjct: 113 FCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLA---QKEKVERDRKKLAR 169
Query: 121 RGKYLTL--TDKTGL--------TGAMARNIAGLPXXXXXXXXIIAKFVPSQASAEVEEL 170
R Y+ L +DK GL GA +AGL I K P+QA EVE L
Sbjct: 170 RRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEI-KIEPAQAVDEVEPL 228
Query: 171 PEDYFTKEVNLNQITSMPQRLLSPEWQPTDVSRLHPIAKLLSVKRSQRCRECDHNLTKPE 230
PEDY+T+ VNL ++T++ QRLL P++QP S+L+P K L +KRS RCR+C+HNL+KPE
Sbjct: 229 PEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPE 288
Query: 231 YNPGSIKFKIELLAFYHIPEVKIISYEPMKAGENSTVLLKLSNPTAHEMTLCLMNPED 288
+NP SIKFKI+L+A +IPEV+I+S ++ + S VLL L+NP + + L E+
Sbjct: 289 FNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEE 346
Score = 33.1 bits (72), Expect = 1.9
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 346 RDDAAEYDDDAT----HDANDVIVWRKANKLGVRLQVATE 381
+D AAEYD+ A D D+I +RKANK+G+ ++V +
Sbjct: 370 KDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQ 409
>AK000299-1|BAA91066.1| 460|Homo sapiens protein ( Homo sapiens
cDNA FLJ20292 fis, clone HEP05374. ).
Length = 460
Score = 254 bits (621), Expect = 6e-67
Identities = 137/298 (45%), Positives = 185/298 (62%), Gaps = 19/298 (6%)
Query: 1 MPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLACF 60
MPS+EA+LKKNRC++CFDCP C HTLSTRA+ + + + + KK YYLAC
Sbjct: 58 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTM-----KKAYYLACG 112
Query: 61 NCRWTSRDVGIPDQPVASGGWPERPNPFATQINQLLEYYKAIALXXXXXXXXXXXXXFAI 120
CRWTSRDVG+ D+ VASGGW E NP ++N+L+EYY+ +A A
Sbjct: 113 FCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLA---QKEKVERDRKKLAR 169
Query: 121 RGKYLTL--TDKTGL--------TGAMARNIAGLPXXXXXXXXIIAKFVPSQASAEVEEL 170
R Y+ L +DK GL GA +AGL I K P+QA EVE L
Sbjct: 170 RRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEI-KIEPAQAVDEVEPL 228
Query: 171 PEDYFTKEVNLNQITSMPQRLLSPEWQPTDVSRLHPIAKLLSVKRSQRCRECDHNLTKPE 230
PEDY+T+ VNL ++T++ QRLL P++QP S+L+P K L +KRS RCR+C+HNL+KPE
Sbjct: 229 PEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPE 288
Query: 231 YNPGSIKFKIELLAFYHIPEVKIISYEPMKAGENSTVLLKLSNPTAHEMTLCLMNPED 288
+NP SIKFKI+L+A +IPEV+I+S ++ + S VLL L+NP + + L E+
Sbjct: 289 FNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEE 346
Score = 33.1 bits (72), Expect = 1.9
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 346 RDDAAEYDDDAT----HDANDVIVWRKANKLGVRLQVATE 381
+D AAEYD+ A D D+I +RKANK+G+ ++V +
Sbjct: 370 KDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQ 409
>AF195120-1|AAF03896.1| 460|Homo sapiens dynactin p62 subunit
protein.
Length = 460
Score = 254 bits (621), Expect = 6e-67
Identities = 137/298 (45%), Positives = 185/298 (62%), Gaps = 19/298 (6%)
Query: 1 MPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLACF 60
MPS+EA+LKKNRC++CFDCP C HTLSTRA+ + + + + KK YYLAC
Sbjct: 58 MPSAEAKLKKNRCANCFDCPGCMHTLSTRATSISTQLPDDPAKTTM-----KKAYYLACG 112
Query: 61 NCRWTSRDVGIPDQPVASGGWPERPNPFATQINQLLEYYKAIALXXXXXXXXXXXXXFAI 120
CRWTSRDVG+ D+ VASGGW E NP ++N+L+EYY+ +A A
Sbjct: 113 FCRWTSRDVGMADKSVASGGWQEPENPHTQRMNKLIEYYQQLA---QKEKVERDRKKLAR 169
Query: 121 RGKYLTL--TDKTGL--------TGAMARNIAGLPXXXXXXXXIIAKFVPSQASAEVEEL 170
R Y+ L +DK GL GA +AGL I K P+QA EVE L
Sbjct: 170 RRNYMPLAFSDKYGLGTRLQRPRAGASISTLAGLSLKEGEDQKEI-KIEPAQAVDEVEPL 228
Query: 171 PEDYFTKEVNLNQITSMPQRLLSPEWQPTDVSRLHPIAKLLSVKRSQRCRECDHNLTKPE 230
PEDY+T+ VNL ++T++ QRLL P++QP S+L+P K L +KRS RCR+C+HNL+KPE
Sbjct: 229 PEDYYTRPVNLTEVTTLQQRLLQPDFQPVCASQLYPRHKHLLIKRSLRCRKCEHNLSKPE 288
Query: 231 YNPGSIKFKIELLAFYHIPEVKIISYEPMKAGENSTVLLKLSNPTAHEMTLCLMNPED 288
+NP SIKFKI+L+A +IPEV+I+S ++ + S VLL L+NP + + L E+
Sbjct: 289 FNPTSIKFKIQLVAVNYIPEVRIMSIPNLRYMKESQVLLTLTNPVENLTHVTLFECEE 346
Score = 33.1 bits (72), Expect = 1.9
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 346 RDDAAEYDDDAT----HDANDVIVWRKANKLGVRLQVATE 381
+D AAEYD+ A D D+I +RKANK+G+ ++V +
Sbjct: 370 KDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQ 409
>AL162085-1|CAB82417.1| 144|Homo sapiens hypothetical protein
protein.
Length = 144
Score = 33.1 bits (72), Expect = 1.9
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 346 RDDAAEYDDDAT----HDANDVIVWRKANKLGVRLQVATE 381
+D AAEYD+ A D D+I +RKANK+G+ ++V +
Sbjct: 54 KDAAAEYDELAEPQDFQDDPDIIAFRKANKVGIFIKVTPQ 93
>M19154-2|AAA50405.1| 413|Homo sapiens transforming growth factor
beta 2 protein.
Length = 413
Score = 32.3 bits (70), Expect = 3.4
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 183 QITSMPQRLLSPEWQPTDVSRLHPIAK-LLSVKRSQRCRECDHNLTKPEYNPGSIKFKIE 241
++TS P+ PE P +V ++ + LL K S+R C+ + EY + +KI+
Sbjct: 49 KLTSPPEDYPEPEEVPPEVISIYNSTRDLLQEKASRRAAACERERSDEEYYAKEV-YKID 107
Query: 242 LLAFYHIPEVKIISYEP 258
+ F+ + Y P
Sbjct: 108 MPPFFPSEAIPPTFYRP 124
>AB124552-1|BAC99057.1| 917|Homo sapiens KIAA2038 protein protein.
Length = 917
Score = 31.5 bits (68), Expect = 5.9
Identities = 18/64 (28%), Positives = 22/64 (34%)
Query: 24 HTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLACFNCRWTSRDVGIPDQPVASGGWPE 83
H+ S+ S Q+GAG Y L C+ C W VG A G P
Sbjct: 560 HSPSSSLSYYSSGLQDGAGSRSGSGSPSPDTYSLYCYPCTWGDCKVGESSSRPAPGPLPS 619
Query: 84 RPNP 87
P
Sbjct: 620 TTQP 623
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.315 0.131 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,716,752
Number of Sequences: 224733
Number of extensions: 2059211
Number of successful extensions: 11015
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11002
Number of HSP's gapped (non-prelim): 9
length of query: 430
length of database: 73,234,838
effective HSP length: 92
effective length of query: 338
effective length of database: 52,559,402
effective search space: 17765077876
effective search space used: 17765077876
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 67 (31.1 bits)
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