GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002379-TA|BGIBMGA002379-PA|IPR008603|Dynactin p62
         (430 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069420-1|AAL39565.1|  514|Drosophila melanogaster LD13436p pro...   285   8e-77
AE013599-476|AAF59211.1|  514|Drosophila melanogaster CG12042-PA...   285   8e-77

>AY069420-1|AAL39565.1|  514|Drosophila melanogaster LD13436p
           protein.
          Length = 514

 Score =  285 bits (699), Expect = 8e-77
 Identities = 170/456 (37%), Positives = 244/456 (53%), Gaps = 32/456 (7%)

Query: 1   MPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQP-RQQEGA-----GDGKVE------- 47
           +PS+EAR KKN C++CFDCP C HTLS RAS V   R+ E A     GD K E       
Sbjct: 55  IPSTEARHKKNCCANCFDCPCCQHTLSARASTVPVVRKSEEAKEPKDGDSKGEATPPVPA 114

Query: 48  -NKHQ-----KKMYYLACFNCRWTSRDVGIPDQPVASGGWPERPNPFATQINQLLEYYKA 101
            +K       KKMYYL+C +CRWT+RDVGIPDQ VA+G WP+    +  + N L+EY++A
Sbjct: 115 SSKPSAVPTTKKMYYLSCLSCRWTTRDVGIPDQGVATGTWPDNECLYQARFNALVEYFQA 174

Query: 102 IALXXXXXXXXXXXXXFAIRGKYLTLTDKTGLTGAMARNIAGLPXXXXXXXXIIAKFVPS 161
           + L                + K+ +LTD+TGLT ++ R   G          +I    P+
Sbjct: 175 VVLQEKQEKLEFMRRKAPKQHKFPSLTDRTGLTVSLIRRQIGWNDKAPKAKAVIT---PA 231

Query: 162 QASAEVEELPEDYFTKEVNLNQITSMPQRLLSPEWQPTDVSRLHPIAKLLSVKRSQRCRE 221
           +A+AEVE LPE+ FT+ +NL  +T++ QR   P  QPT V  L+P  + L +KRS RCR+
Sbjct: 232 EATAEVEGLPENIFTEPLNLRNVTTITQRHSQPADQPTAVGSLYPQRRSLWIKRSLRCRQ 291

Query: 222 CDHNLTKPEYNPGSIKFKIELLAFYHIPEVKIISYE-PMKAGENSTVLLKLSNPTAHEMT 280
           C+HNL KPEY+P SIK++I+  A YH+PEV ++  E P+ AG+++ +LLKL+NPT ++MT
Sbjct: 292 CEHNLIKPEYHPTSIKYRIQHFASYHVPEVVMVRCEQPLVAGKSNAILLKLTNPTIYDMT 351

Query: 281 LCLM--NPEDIPQVDNEEEQL--ENSLEKSLTLDKESXXXXXXXXXXXXXXXXXXXXXXX 336
           + L+  +P + PQ+  E  ++  E  +  S  L                           
Sbjct: 352 IRLLTASPPEDPQLSTEATRVAKEEPISSSPLLKAVGITLSRQNSTREVKRDVIDISNAE 411

Query: 337 XXXXXS---VPQRDDAAEYDDDATHDAND--VIVWRKANKLGVRLQVATEXXXXXXXXXX 391
                S   + QRDD+ E+D+D      +   IVWRK NK+ +RLQ              
Sbjct: 412 IVPLESEFVLNQRDDSKEFDEDVQLSTEEPKFIVWRKGNKVLLRLQFTPAEELSGLADVV 471

Query: 392 XXXXXQYSYRNTVPPAANAPNQRNHILYTTALLSLG 427
                QY+Y NTV  A        H+L++   ++ G
Sbjct: 472 LGFYMQYTYVNTVNNAQEKREPTTHVLHSRVFITAG 507


>AE013599-476|AAF59211.1|  514|Drosophila melanogaster CG12042-PA
           protein.
          Length = 514

 Score =  285 bits (699), Expect = 8e-77
 Identities = 170/456 (37%), Positives = 244/456 (53%), Gaps = 32/456 (7%)

Query: 1   MPSSEARLKKNRCSSCFDCPSCYHTLSTRASLVQP-RQQEGA-----GDGKVE------- 47
           +PS+EAR KKN C++CFDCP C HTLS RAS V   R+ E A     GD K E       
Sbjct: 55  IPSTEARHKKNCCANCFDCPCCQHTLSARASTVPVVRKSEEAKEPKDGDSKGEATPPVPA 114

Query: 48  -NKHQ-----KKMYYLACFNCRWTSRDVGIPDQPVASGGWPERPNPFATQINQLLEYYKA 101
            +K       KKMYYL+C +CRWT+RDVGIPDQ VA+G WP+    +  + N L+EY++A
Sbjct: 115 SSKPSAVPTTKKMYYLSCLSCRWTTRDVGIPDQGVATGTWPDNECLYQARFNALVEYFQA 174

Query: 102 IALXXXXXXXXXXXXXFAIRGKYLTLTDKTGLTGAMARNIAGLPXXXXXXXXIIAKFVPS 161
           + L                + K+ +LTD+TGLT ++ R   G          +I    P+
Sbjct: 175 VVLQEKQEKLEFMRRKAPKQHKFPSLTDRTGLTVSLIRRQIGWNDKAPKAKAVIT---PA 231

Query: 162 QASAEVEELPEDYFTKEVNLNQITSMPQRLLSPEWQPTDVSRLHPIAKLLSVKRSQRCRE 221
           +A+AEVE LPE+ FT+ +NL  +T++ QR   P  QPT V  L+P  + L +KRS RCR+
Sbjct: 232 EATAEVEGLPENIFTEPLNLRNVTTITQRHSQPADQPTAVGSLYPQRRSLWIKRSLRCRQ 291

Query: 222 CDHNLTKPEYNPGSIKFKIELLAFYHIPEVKIISYE-PMKAGENSTVLLKLSNPTAHEMT 280
           C+HNL KPEY+P SIK++I+  A YH+PEV ++  E P+ AG+++ +LLKL+NPT ++MT
Sbjct: 292 CEHNLIKPEYHPTSIKYRIQHFASYHVPEVVMVRCEQPLVAGKSNAILLKLTNPTIYDMT 351

Query: 281 LCLM--NPEDIPQVDNEEEQL--ENSLEKSLTLDKESXXXXXXXXXXXXXXXXXXXXXXX 336
           + L+  +P + PQ+  E  ++  E  +  S  L                           
Sbjct: 352 IRLLTASPPEDPQLSTEATRVAKEEPISSSPLLKAVGITLSRQNSTREVKRDVIDISNAE 411

Query: 337 XXXXXS---VPQRDDAAEYDDDATHDAND--VIVWRKANKLGVRLQVATEXXXXXXXXXX 391
                S   + QRDD+ E+D+D      +   IVWRK NK+ +RLQ              
Sbjct: 412 IVPLESEFVLNQRDDSKEFDEDVQLSTEEPKFIVWRKGNKVLLRLQFTPAEELSGLADVV 471

Query: 392 XXXXXQYSYRNTVPPAANAPNQRNHILYTTALLSLG 427
                QY+Y NTV  A        H+L++   ++ G
Sbjct: 472 LGFYMQYTYVNTVNNAQEKREPTTHVLHSRVFITAG 507


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,881,133
Number of Sequences: 52641
Number of extensions: 716261
Number of successful extensions: 1938
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1922
Number of HSP's gapped (non-prelim): 6
length of query: 430
length of database: 24,830,863
effective HSP length: 87
effective length of query: 343
effective length of database: 20,251,096
effective search space: 6946125928
effective search space used: 6946125928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)