Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002379-TA|BGIBMGA002379-PA|IPR008603|Dynactin p62
(430 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41559-4|AAC24257.1| 413|Caenorhabditis elegans Hypothetical pr... 88 1e-17
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 30 3.6
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 30 3.6
U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein. 30 3.6
AL132864-4|CAH60767.1| 272|Caenorhabditis elegans Hypothetical ... 29 4.8
AF067948-4|AAO25983.1| 756|Caenorhabditis elegans Egl-27 relate... 29 8.4
AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 relate... 29 8.4
AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 relate... 29 8.4
AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 relate... 29 8.4
>U41559-4|AAC24257.1| 413|Caenorhabditis elegans Hypothetical
protein C26B2.1 protein.
Length = 413
Score = 88.2 bits (209), Expect = 1e-17
Identities = 83/288 (28%), Positives = 122/288 (42%), Gaps = 44/288 (15%)
Query: 2 PSS--EARLKKNRCSSCFDCPSCYHTLSTRASLVQPRQQEGAGDGKVENKHQKKMYYLAC 59
PSS EARLKK++C+SC DCP C + LS R EN + YL C
Sbjct: 55 PSSVPEARLKKHKCASCNDCPKCANVLSART----------------ENDN----VYLVC 94
Query: 60 FNCRWTSRDVGIPDQPVASGGWPERPNPFATQINQLLEYYKAIALXXXXXXXXXXXXXFA 119
CRW+SR+ DQ + WP + NP Q+ ++ Y K + L
Sbjct: 95 QYCRWSSREANQEDQE-NTKSWPTKENPLVNQLGEVTAYMKRLELIENAPKDLKKGKS-- 151
Query: 120 IRGKYLT---LTDKTGLTGAMARNIAGLPXXXXXXXXIIAKFVPSQASAEVEELPEDYFT 176
GK T L DK G + + L P+ E++E +D T
Sbjct: 152 --GKAWTAFHLKDKFGFQQMVDKRKKALAPEMNPVDAHAPTEAPT-LEDEIKERTDDLRT 208
Query: 177 KEVNLNQITSMPQRLLSPEWQPTDVSRLHPIAKLLSVKRSQRCRECDHNLTKPEYNPGSI 236
L+QI P +S P V P+A + V RC EC+ L K ++ +
Sbjct: 209 ----LDQIIMQPLINISEPLLPVQV----PLAGRVQV----RCDECERTLIKRDFGVTTF 256
Query: 237 KFKIELLAFYHIPEVKII-SYEPMKAGENSTVLLKLSNPTAHEMTLCL 283
KFKI A +P++++ + +K GE S V L ++N ++ M L +
Sbjct: 257 KFKISSFARQFVPDIRMSRPVDDLKVGETSHVFLSITNLSSSAMDLTI 304
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.9 bits (64), Expect = 3.6
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 155 IAKFVPSQASAEVEELPEDYFTKEVNLNQIT--SMPQRLLSPEWQPTDVSRLHPIA 208
IA+ P AE E+L E TKE QIT +PQ E + + R+H +A
Sbjct: 6453 IAEPTPPPQPAEPEQLAEYEATKESEHQQITEGDVPQEEEETEMRRQETERIHSLA 6508
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.9 bits (64), Expect = 3.6
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 155 IAKFVPSQASAEVEELPEDYFTKEVNLNQIT--SMPQRLLSPEWQPTDVSRLHPIA 208
IA+ P AE E+L E TKE QIT +PQ E + + R+H +A
Sbjct: 6453 IAEPTPPPQPAEPEQLAEYEATKESEHQQITEGDVPQEEEETEMRRQETERIHSLA 6508
>U21733-1|AAB38384.1| 869|Caenorhabditis elegans UNC-44 protein.
Length = 869
Score = 29.9 bits (64), Expect = 3.6
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 155 IAKFVPSQASAEVEELPEDYFTKEVNLNQIT--SMPQRLLSPEWQPTDVSRLHPIA 208
IA+ P AE E+L E TKE QIT +PQ E + + R+H +A
Sbjct: 328 IAEPTPPPQPAEPEQLAEYEATKESEHQQITEGDVPQEEEETEMRRQETERIHSLA 383
>AL132864-4|CAH60767.1| 272|Caenorhabditis elegans Hypothetical
protein Y53H1A.5 protein.
Length = 272
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 249 PEVKIISYEPMKAGENSTVLLKLSNPTAHEMTLCLMNPEDIPQVDNEEEQL 299
P+ K++ Y + GE+ TVL+ +SN + + + + ++ + QL
Sbjct: 66 PDCKLVEYTWQENGESRTVLIPMSNDSTEDDVRSALPQSVLESINQHQNQL 116
>AF067948-4|AAO25983.1| 756|Caenorhabditis elegans Egl-27 related
protein 1, isoform c protein.
Length = 756
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 250 EVKIISYEPMKAGENSTVLLKLSNPTAHEMTLCLMNPEDIPQVDNEEEQLENSLEKSLTL 309
E K+++ + K E + + + T ++ L + E++P++ NEE++ E++ T
Sbjct: 304 EAKVLAEKVKKEEEEAKLKAEAEEDTEND-GLTIAEDEEMPELKNEEKEETKVEEEATTT 362
Query: 310 DKE 312
D E
Sbjct: 363 DSE 365
>AF067948-3|AAO25984.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform d protein.
Length = 870
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 250 EVKIISYEPMKAGENSTVLLKLSNPTAHEMTLCLMNPEDIPQVDNEEEQLENSLEKSLTL 309
E K+++ + K E + + + T ++ L + E++P++ NEE++ E++ T
Sbjct: 304 EAKVLAEKVKKEEEEAKLKAEAEEDTEND-GLTIAEDEEMPELKNEEKEETKVEEEATTT 362
Query: 310 DKE 312
D E
Sbjct: 363 DSE 365
>AF067948-2|AAD34654.1| 870|Caenorhabditis elegans Egl-27 related
protein 1, isoform b protein.
Length = 870
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 250 EVKIISYEPMKAGENSTVLLKLSNPTAHEMTLCLMNPEDIPQVDNEEEQLENSLEKSLTL 309
E K+++ + K E + + + T ++ L + E++P++ NEE++ E++ T
Sbjct: 304 EAKVLAEKVKKEEEEAKLKAEAEEDTEND-GLTIAEDEEMPELKNEEKEETKVEEEATTT 362
Query: 310 DKE 312
D E
Sbjct: 363 DSE 365
>AF067948-1|AAD34653.1| 1022|Caenorhabditis elegans Egl-27 related
protein 1, isoform a protein.
Length = 1022
Score = 28.7 bits (61), Expect = 8.4
Identities = 15/63 (23%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 250 EVKIISYEPMKAGENSTVLLKLSNPTAHEMTLCLMNPEDIPQVDNEEEQLENSLEKSLTL 309
E K+++ + K E + + + T ++ L + E++P++ NEE++ E++ T
Sbjct: 304 EAKVLAEKVKKEEEEAKLKAEAEEDTEND-GLTIAEDEEMPELKNEEKEETKVEEEATTT 362
Query: 310 DKE 312
D E
Sbjct: 363 DSE 365
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.131 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,423,245
Number of Sequences: 27539
Number of extensions: 352639
Number of successful extensions: 870
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 15
length of query: 430
length of database: 12,573,161
effective HSP length: 83
effective length of query: 347
effective length of database: 10,287,424
effective search space: 3569736128
effective search space used: 3569736128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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