GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002379-TA|BGIBMGA002379-PA|IPR008603|Dynactin p62
         (430 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.70 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   3.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 16  CFDCPSCYHTLSTRASLVQPRQQE 39
           C+ C  C  TLST+ +L + ++Q+
Sbjct: 371 CYTCDVCGKTLSTKLTLKRHKEQQ 394


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 264 NSTVLLKLSNPTAHEMTLCLMNPEDIPQVDNEEEQLENSLEKSLT 308
           NS VL K +     E T+   N ++   +DN+E  +EN+  KS T
Sbjct: 154 NSDVLFKQNKE--EEQTI---NRKNSDYLDNQEVSMENTENKSCT 193


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.131    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,991
Number of Sequences: 429
Number of extensions: 3992
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 430
length of database: 140,377
effective HSP length: 60
effective length of query: 370
effective length of database: 114,637
effective search space: 42415690
effective search space used: 42415690
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)