GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002378-TA|BGIBMGA002378-PA|undefined
         (230 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   4.6  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   8.0  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
          protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 7/45 (15%)

Query: 7  MWWPPQTSFYASLHAAMFLSFAAGTLYYFLQSLLEGPGFVPLGWQ 51
          M+ P Q    + L AA  LS      ++        PG +PL WQ
Sbjct: 30 MFTPSQLLMASHLMAASRLSLPTNPAFFH-------PGLLPLAWQ 67


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 91  HTTVGNVLSICMYHAINRIW 110
           +T +G    +C  +A N +W
Sbjct: 130 YTVLGAACQVCTPNATNTVW 149


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 6/20 (30%), Positives = 11/20 (55%)

Query: 91  HTTVGNVLSICMYHAINRIW 110
           +T +G    +C  +A N +W
Sbjct: 130 YTVLGAACQVCTPNATNTVW 149


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.140    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,708
Number of Sequences: 317
Number of extensions: 1940
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 230
length of database: 114,650
effective HSP length: 55
effective length of query: 175
effective length of database: 97,215
effective search space: 17012625
effective search space used: 17012625
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)