GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002378-TA|BGIBMGA002378-PA|undefined
         (230 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.57 
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    25   7.1  

>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 66  VSRTKKRMPNIYNFAQFVKDTRLHGHTTVGNVLSIC 101
           V   +K  P I    +FV DTR++ H  +G  + +C
Sbjct: 95  VKTPEKAFPTIRIRDEFVLDTRMYNHEQLGKSIDLC 130


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 39  LLEGPGFVPLGWQPILHMVGSNQ 61
           L+  PG  P+GW+PI+    ++Q
Sbjct: 95  LISPPGSPPVGWEPIVEESPNSQ 117


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.140    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 958,017
Number of Sequences: 5004
Number of extensions: 34733
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 2
length of query: 230
length of database: 2,362,478
effective HSP length: 70
effective length of query: 160
effective length of database: 2,012,198
effective search space: 321951680
effective search space used: 321951680
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)