GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002378-TA|BGIBMGA002378-PA|undefined
         (230 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785...    29   4.2  
11_05_0097 - 19036044-19036358,19036502-19036585,19036772-190376...    28   5.5  
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524     28   7.3  
10_08_0290 + 16549048-16549262,16549770-16549833,16550106-165502...    27   9.6  

>04_04_1250 +
           32077590-32078000,32078132-32078308,32078437-32078561,
           32078629-32078761,32078866-32079015,32079105-32079158,
           32079437-32079532,32080021-32080095,32080723-32080824,
           32080903-32081589,32081686-32081817,32081916-32082023,
           32082170-32082319
          Length = 799

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 8/83 (9%)

Query: 31  TLYYFLQSLLEGPGFVP-LGWQPILHMVGS-NQTHFNVSRTKKRMPNIYNFAQFVKDTRL 88
           T+  F++  + G   V  L +  I+H +   NQTH N +R +K    ++ F Q  +++R 
Sbjct: 144 TMELFMELQVIGDRAVKKLAFSHIVHSIRRMNQTHKNEARNRKLQNILFTFLQGEEESRA 203

Query: 89  HGHTTVGNVLSICMYHAINRIWY 111
               T+     +C  H   R+W+
Sbjct: 204 KRAFTI-----LCDLHR-RRVWF 220


>11_05_0097 -
           19036044-19036358,19036502-19036585,19036772-19037644,
           19038059-19038157
          Length = 456

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 54  LHMVGSNQTHFNVSRTKKRMPNIYNFAQFVKDTRLHGHTTVGNVLSICMYHAINRIWYIH 113
           LH   + +T   VSR+ +R+   Y    F + T LHG  T  + L+      +N I +  
Sbjct: 43  LHFKEAARTSM-VSRSWRRLWRCYPNLVFTRQTMLHGSITADDRLAATFISRVNSILWQF 101

Query: 114 HGSGDEPMI 122
             S  E  I
Sbjct: 102 RSSSLENFI 110


>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
          Length = 652

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 91  HTTVGNVLSICMYHAIN-RIWYIHHGSGDEPMIY 123
           H  +G VL I +Y  IN + W++ H SG +P+ +
Sbjct: 605 HLALGEVLQI-LYIIINTKKWFVPHSSGWQPLSF 637


>10_08_0290 +
           16549048-16549262,16549770-16549833,16550106-16550267,
           16550786-16550956,16551041-16551235,16551421-16551546,
           16551648-16551809,16551953-16552120,16552223-16552435
          Length = 491

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 20  HAAMFLSFAAGTLYYFLQSLLEGPGFVPL 48
           H+   L FA+G LYY  Q+L +G   V L
Sbjct: 294 HSDTALQFASGRLYYIYQTLHDGEETVSL 322


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.140    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,536,686
Number of Sequences: 37544
Number of extensions: 241784
Number of successful extensions: 550
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 4
length of query: 230
length of database: 14,793,348
effective HSP length: 80
effective length of query: 150
effective length of database: 11,789,828
effective search space: 1768474200
effective search space used: 1768474200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)