GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002378-TA|BGIBMGA002378-PA|undefined
         (230 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69634-9|CAA93457.2|  431|Caenorhabditis elegans Hypothetical pr...    79   2e-15
Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical pr...    79   2e-15
U41010-2|AAF98588.1|  585|Caenorhabditis elegans Trehalase prote...    27   8.5  
AJ512334-1|CAD54508.2|  585|Caenorhabditis elegans trehalase pro...    27   8.5  

>Z69634-9|CAA93457.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 91  HTTVGNVLSICMYHAINRIWYIHHGSGDEPMIYVXXXXXXXXXXSIGMXXXXXXXXXXXX 150
           H+T+  +    +YHAI   WY  +G G EP+I +          +I M            
Sbjct: 164 HSTI--IDGSALYHAIFAGWYQKYGDGTEPIILLTPISFIALVFAIAMAIAVALALTFLF 221

Query: 151 XXQIRGILRNQTTIEDWIMEKAAGRR-------EEQ-----GLPPFVFPYDVGWKRNIAS 198
             Q+R ++RN+  IED+I  K+   R       EE+      L  + +PYD+GWKRN+  
Sbjct: 222 ITQLRYVIRNRNGIEDYIHGKSLNMRKVHEGDDEEEIEWIKSLGEWTYPYDLGWKRNLRE 281

Query: 199 VL-----SRSRGDGIRWPLKDGCGQYDLTV 223
           V       R+RG+G  WP+ +GC Q+  T+
Sbjct: 282 VFIGIFDGRTRGNGTWWPVVNGCTQFTFTI 311



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 9  WPPQTSFYASLHAAMFLSFAAGTLYYFLQSLLEGPGFVPLGWQP 52
          W P TS+    +   FL +   T+     +   GPG+VP GW+P
Sbjct: 53 WMPVTSYMGLFNTLTFLLWNYLTIGNLFNASFFGPGYVPRGWRP 96


>Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 79.4 bits (187), Expect = 2e-15
 Identities = 47/150 (31%), Positives = 72/150 (48%), Gaps = 19/150 (12%)

Query: 91  HTTVGNVLSICMYHAINRIWYIHHGSGDEPMIYVXXXXXXXXXXSIGMXXXXXXXXXXXX 150
           H+T+  +    +YHAI   WY  +G G EP+I +          +I M            
Sbjct: 164 HSTI--IDGSALYHAIFAGWYQKYGDGTEPIILLTPISFIALVFAIAMAIAVALALTFLF 221

Query: 151 XXQIRGILRNQTTIEDWIMEKAAGRR-------EEQ-----GLPPFVFPYDVGWKRNIAS 198
             Q+R ++RN+  IED+I  K+   R       EE+      L  + +PYD+GWKRN+  
Sbjct: 222 ITQLRYVIRNRNGIEDYIHGKSLNMRKVHEGDDEEEIEWIKSLGEWTYPYDLGWKRNLRE 281

Query: 199 VL-----SRSRGDGIRWPLKDGCGQYDLTV 223
           V       R+RG+G  WP+ +GC Q+  T+
Sbjct: 282 VFIGIFDGRTRGNGTWWPVVNGCTQFTFTI 311



 Score = 35.1 bits (77), Expect = 0.043
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 9  WPPQTSFYASLHAAMFLSFAAGTLYYFLQSLLEGPGFVPLGWQP 52
          W P TS+    +   FL +   T+     +   GPG+VP GW+P
Sbjct: 53 WMPVTSYMGLFNTLTFLLWNYLTIGNLFNASFFGPGYVPRGWRP 96


>U41010-2|AAF98588.1|  585|Caenorhabditis elegans Trehalase protein
           2 protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 184 FVFPYDVGWKRNIASVLSRSRGDGIRWPLKDGCGQYDLTVS 224
           +V     GW   +     ++ G  IRW + + C   D+T+S
Sbjct: 501 YVMQEGFGWTNGVILDFLKNYGSKIRWQVAESCECCDVTLS 541


>AJ512334-1|CAD54508.2|  585|Caenorhabditis elegans trehalase
           protein.
          Length = 585

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 184 FVFPYDVGWKRNIASVLSRSRGDGIRWPLKDGCGQYDLTVS 224
           +V     GW   +     ++ G  IRW + + C   D+T+S
Sbjct: 501 YVMQEGFGWTNGVILDFLKNYGSKIRWQVAESCECCDVTLS 541


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.140    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,191,950
Number of Sequences: 27539
Number of extensions: 185918
Number of successful extensions: 405
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 395
Number of HSP's gapped (non-prelim): 6
length of query: 230
length of database: 12,573,161
effective HSP length: 79
effective length of query: 151
effective length of database: 10,397,580
effective search space: 1570034580
effective search space used: 1570034580
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)