GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA002378-TA|BGIBMGA002378-PA|undefined
         (230 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   4.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   9.6  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 49  GWQPILHMVGSNQTHFNVSRTKKRMPNIY 77
           G   I++M+    T F+V    K+ PN+Y
Sbjct: 432 GAMKIVNMLNQLYTAFDVLTDPKKNPNVY 460


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
          protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 2  VHMLGMWWPPQTSFYASLHA 21
          + ML   W P T FY   H+
Sbjct: 79 ISMLARIWKPDTYFYNGKHS 98


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 53  ILHMVGSNQTHFNVSRTKKRMPNIY 77
           I++M+    T F+V    K+ PN+Y
Sbjct: 436 IVNMLNQLYTAFDVLTDPKKNPNVY 460


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 2   VHMLGMWWPPQTSFYASLHA 21
           + ML   W P T FY   H+
Sbjct: 111 IKMLERIWRPDTYFYNGKHS 130


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.140    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,666
Number of Sequences: 429
Number of extensions: 2401
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 230
length of database: 140,377
effective HSP length: 56
effective length of query: 174
effective length of database: 116,353
effective search space: 20245422
effective search space used: 20245422
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 42 (21.0 bits)