Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA002377-TA|BGIBMGA002377-PA|IPR007087|Zinc finger,
C2H2-type, IPR011011|Zinc finger, FYVE/PHD-type, IPR012934|Zinc
finger, AD-type
(387 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0042 - 290077-290676,291093-291233,291675-291764,292364-29... 60 4e-09
02_04_0194 + 20820985-20821027,20822168-20822367,20822477-208225... 54 1e-07
02_01_0113 - 854108-854302,854399-854542,854658-854893,855036-85... 54 2e-07
03_01_0360 + 2815067-2816033,2816120-2816198,2816275-2816342,281... 46 4e-05
05_01_0160 + 1081416-1081647,1081840-1082012,1082169-1082246,108... 45 1e-04
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 39 0.006
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703... 38 0.014
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 36 0.055
03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524 36 0.073
12_02_0916 - 24271151-24271894 33 0.29
09_02_0226 - 6007656-6008063,6012166-6012678 32 0.68
03_05_0291 - 22837412-22838128 32 0.90
09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361 31 1.6
03_04_0187 - 18236041-18236643 31 1.6
02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486 31 1.6
09_02_0366 + 7941550-7942161,7942230-7942775 31 2.1
03_04_0188 - 18241815-18242477 30 2.7
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413 30 3.6
08_02_0574 - 18867623-18868033,18869751-18870209 30 3.6
01_06_1284 + 35994595-35995074 30 3.6
11_02_0035 - 7597926-7598105,7598255-7598418,7598673-7598735,759... 29 4.8
08_02_0250 + 14772746-14773037,14773141-14773203,14773458-147736... 29 4.8
04_04_1176 + 31494318-31495685 29 4.8
11_08_0066 - 28131521-28132012 29 6.3
04_04_0157 + 23165638-23166633 29 6.3
10_08_0352 + 17091637-17091945,17092049-17096617,17096975-170971... 29 8.4
08_02_0100 + 12350498-12350538,12351216-12351717 29 8.4
07_03_1094 + 23919878-23920520,23921297-23921363,23921364-239214... 29 8.4
02_03_0144 + 15694766-15694883,15694980-15697612 29 8.4
01_01_0205 + 1764034-1767601,1767934-1767944 29 8.4
>05_01_0042 -
290077-290676,291093-291233,291675-291764,292364-292563,
292685-292743,292827-292942
Length = 401
Score = 59.7 bits (138), Expect = 4e-09
Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 10/84 (11%)
Query: 296 CGKRLSSRGALRRHAHVHTVERPHACSV--CGRTFAQRSVLQRHKLVHLGLSRHMLTHSG 353
CGK ALR+HAHVH ER + C CG+ F S L+RH L+H G + H
Sbjct: 94 CGKTFVDVAALRKHAHVHN-ERQYICQEPGCGKKFVDSSKLKRHHLIHTGQKDFICPHP- 151
Query: 354 RVYECGGCGRQFNDKSSLLRHLKT 377
GCG+ F+ +L HLKT
Sbjct: 152 ------GCGKAFSLDFNLRSHLKT 169
Score = 35.1 bits (77), Expect = 0.096
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 296 CGKRLSSRGALRRHAHVHTVERPHAC--SVCGRTFAQRSVLQRHKLVH 341
CGK S LR H H +E H C CG+ F S L+ H H
Sbjct: 153 CGKAFSLDFNLRSHLKTHALENYHVCPFPACGKRFTSDSKLKSHVKGH 200
>02_04_0194 +
20820985-20821027,20822168-20822367,20822477-20822566,
20822820-20822825,20822866-20823009,20823089-20823580
Length = 324
Score = 54.4 bits (125), Expect = 1e-07
Identities = 34/86 (39%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 296 CGKRLSSRGALRRHAHVHTVERPHAC--SVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSG 353
CGK GALR+HAHVH ER + C + C + F S L+RH L+H G + H G
Sbjct: 50 CGKTFVDAGALRKHAHVHG-ERQYVCHYAGCDKKFLDSSKLKRHFLIHTGEKNFVCPHEG 108
Query: 354 RVYECGGCGRQFNDKSSLLRHLKTAS 379
CG F+ +L H+KT S
Sbjct: 109 ----CGKV-LAFSLDFNLKAHMKTHS 129
>02_01_0113 -
854108-854302,854399-854542,854658-854893,855036-855315,
856891-857031,857259-857372
Length = 369
Score = 54.0 bits (124), Expect = 2e-07
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 11/95 (11%)
Query: 293 CGACGKRLSSRGALRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHS 352
C CG L++H H+ ER C + F+ + + H L+RHML H
Sbjct: 62 CQECGASFQKPAHLKQHMQSHSDERSFICPLEDCPFSY--IRKDH------LNRHMLKHQ 113
Query: 353 GRVYECG--GCGRQFNDKSSLLRHLKTASHRDQPA 385
G+++ C GCGR+F+ K+++ RH+K H D+ A
Sbjct: 114 GKLFTCSMDGCGRKFSIKANMQRHVKEI-HEDETA 147
Score = 32.7 bits (71), Expect = 0.51
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Query: 296 CGKRLSSRGALRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSGRV 355
C K ++ LR AH + C +CG ++++ +RH L H S
Sbjct: 193 CMKTFTNVECLR--AHNQACHQYVQCDICGEKHLKKNI-KRH------LRAHEEVPSTER 243
Query: 356 YECG--GCGRQFNDKSSLLRHLKTASHRDQPAA 386
+C GC F++KS+L +H+K + + +P A
Sbjct: 244 IKCSFEGCECSFSNKSNLTKHIKASHDQVKPFA 276
>03_01_0360 +
2815067-2816033,2816120-2816198,2816275-2816342,
2817382-2817464,2821566-2823083
Length = 904
Score = 46.4 bits (105), Expect = 4e-05
Identities = 33/90 (36%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 295 ACGKRLSSRGALRRHAHVHTVERPHAC--SVCGRTFAQRSVLQRHKLVHLGLSRHMLTHS 352
+CGKR SS L+RH VH ERP C C TF H VH G
Sbjct: 823 SCGKRFSSHKYLKRHQCVHRDERPFKCPWDGCPMTFKWLWAQTEHIRVHTG--------- 873
Query: 353 GRVYECGG--CGRQFNDKSSLLRHLKTASH 380
R Y+C CG+ F S RH K +H
Sbjct: 874 ERPYKCSAPDCGQSFRYVSDYSRHRKKFNH 903
>05_01_0160 +
1081416-1081647,1081840-1082012,1082169-1082246,
1082372-1082529,1082558-1082709,1083232-1083290,
1083633-1083912,1084235-1084470,1084601-1084744,
1084845-1085012
Length = 559
Score = 44.8 bits (101), Expect = 1e-04
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 12/80 (15%)
Query: 306 LRRHAHVHTV-ERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSGRVYEC--GGCG 362
L + VHT+ +RP +C V G F+ + H L+RH+LTH G+++ C GC
Sbjct: 273 LHQECLVHTLFQRPFSCHVDGCPFSYSR--KDH------LNRHLLTHQGKLFACPMEGCN 324
Query: 363 RQFNDKSSLLRHLKTASHRD 382
R+F K ++ RH++ H+D
Sbjct: 325 RKFTIKGNIQRHVQ-EMHKD 343
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 39.1 bits (87), Expect = 0.006
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 296 CGKRLSSRGALRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSG-R 354
CGK+ S L +H VHT +RP C G A + R + H+ H+G R
Sbjct: 1116 CGKKFFSHKYLLQHRKVHTDDRPLTCPWKGCNMAFKWPWAR--------TEHLRVHTGDR 1167
Query: 355 VYEC--GGCGRQFNDKSSLLRHLKTASH 380
Y C GC + F S RH + H
Sbjct: 1168 PYVCHEPGCAQTFRFVSDFSRHKRKTGH 1195
>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
10470975-10471666,10471912-10472062,10473797-10473864,
10473964-10474042,10474763-10474765,10476427-10477255
Length = 1349
Score = 37.9 bits (84), Expect = 0.014
Identities = 28/89 (31%), Positives = 35/89 (39%), Gaps = 13/89 (14%)
Query: 296 CGKRLSSRGALRRHAHVHTVERPHACS--VCGRTFAQRSVLQRHKLVHLGLSRHMLTHSG 353
C K+ L +H VH ERP C+ C + F H VH G+
Sbjct: 1260 CKKKFFCHKYLLQHRKVHIDERPLKCTWKGCKKAFKWPWARTEHMRVHTGV--------- 1310
Query: 354 RVYEC--GGCGRQFNDKSSLLRHLKTASH 380
R YEC GCG+ F S RH + H
Sbjct: 1311 RPYECQEPGCGQTFRFVSDFSRHKRKTGH 1339
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 35.9 bits (79), Expect = 0.055
Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 290 GAWCGACGKRLSSRGALRRH-AHVHTVE-----RPHACSVCGRTFAQRSVLQRHKLVHLG 343
G C C + S L H VH E R ++C+VC +F R VL+RH V
Sbjct: 462 GLKCKICSQEFSDDQGLGLHWTEVHKKEVRWLFRGYSCAVCMDSFTNRRVLERH--VQEK 519
Query: 344 LSRHMLTHSGRVYECGGCGRQFNDKSSLLRHLKTASHRD 382
L +S + C C F + L +H+ + RD
Sbjct: 520 HGAQYLQYS-TLLRCISCNSNFLNTDLLWQHIVSDHSRD 557
>03_01_0342 - 2695323-2697007,2697134-2697248,2697369-2697524
Length = 651
Score = 35.5 bits (78), Expect = 0.073
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 295 ACGKRLSSRGALRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSG- 353
+CG+ S LRRH +H + P+ C G + A + R H H+G
Sbjct: 569 SCGRHFRSHKYLRRHQSIHNDDMPYKCPWEGCSMAFKWSWDR--------GEHFQVHAGK 620
Query: 354 RVYEC--GGCGRQFNDKSSLLRH 374
R Y+C GC + + S RH
Sbjct: 621 RPYKCTTPGCSKIYKFVSDFTRH 643
>12_02_0916 - 24271151-24271894
Length = 247
Score = 33.5 bits (73), Expect = 0.29
Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 278 KLPSSENQSKGQGAWCGACGKRLSSRGALRRHAHVHTVERPHACSVCGRTFAQRSVLQRH 337
+LP SE + A G+R A A VE H CSVCG+ FA L H
Sbjct: 52 QLPPSEEEYLALCLLMLARGRRDGDDVAASASAAAAAVE--HRCSVCGKAFASYQALGGH 109
Query: 338 KLVH 341
K H
Sbjct: 110 KASH 113
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 317 RPHACSVCGRTFAQRSVLQRHKLVH 341
R H C+VCG+ F L HK H
Sbjct: 153 RAHECNVCGKAFPTGQALGGHKRCH 177
>09_02_0226 - 6007656-6008063,6012166-6012678
Length = 306
Score = 32.3 bits (70), Expect = 0.68
Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 306 LRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSGRVYECGGCGRQF 365
L+ H +P AC CG+ A R + H+ + GR + C CG F
Sbjct: 226 LQTHYKRKHCAKPFACRKCGKPLAVRGDWRTHE-----------KNCGRRWHC-ACGSDF 273
Query: 366 NDKSSLLRHLKT--ASHRDQP 384
K SL H++ HR++P
Sbjct: 274 KHKRSLKDHIRAFGRDHRERP 294
>03_05_0291 - 22837412-22838128
Length = 238
Score = 31.9 bits (69), Expect = 0.90
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 316 ERPHACSVCGRTFAQRSVLQRHKLVH 341
+ H CSVCGR F+ L HK H
Sbjct: 86 QEQHGCSVCGRVFSSYQALGGHKTSH 111
>09_04_0332 + 16767925-16768063,16768288-16768690,16769389-16770361
Length = 504
Score = 31.1 bits (67), Expect = 1.6
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 12/84 (14%)
Query: 304 GALRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSGRVYECGGCGR 363
G + H+ R AC+ C + +A VH H+ T R + C CGR
Sbjct: 129 GIKKHFRRKHSGHRQWACARCSKAYA----------VHSDYKAHLKTCGTRGHSC-DCGR 177
Query: 364 QFNDKSSLLRHLKTA-SHRDQPAA 386
F+ S + H T + R Q AA
Sbjct: 178 VFSRVESFIEHQDTCNASRGQAAA 201
>03_04_0187 - 18236041-18236643
Length = 200
Score = 31.1 bits (67), Expect = 1.6
Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 319 HACSVCGRTFAQRSVLQRHKLVHL--GLSRHMLTHS 352
H CSVC RTFA L HK H GLS +T S
Sbjct: 109 HRCSVCHRTFATGQALGGHKRCHYWDGLSVVSVTAS 144
>02_02_0525 - 11182043-11182080,11182386-11182511,11182760-11183486
Length = 296
Score = 31.1 bits (67), Expect = 1.6
Identities = 19/52 (36%), Positives = 21/52 (40%)
Query: 290 GAWCGACGKRLSSRGALRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVH 341
GA G KRL + A H H C+VC R FA L HK H
Sbjct: 138 GAGKGKGKKRLLAPAAAAAPHHSPATCADHKCAVCHRGFATGQALGGHKRCH 189
>09_02_0366 + 7941550-7942161,7942230-7942775
Length = 385
Score = 30.7 bits (66), Expect = 2.1
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 317 RPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSGRVYECGGCGRQFNDKSSLLRHLK 376
RP+AC CG+ FA R + H+ + G+++ C CG F K SL H++
Sbjct: 277 RPYACRRCGKRFAVRGDWRTHE-----------KNCGKLWFC-VCGSDFKHKRSLKDHVR 324
Query: 377 T 377
+
Sbjct: 325 S 325
Score = 29.5 bits (63), Expect = 4.8
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 8/80 (10%)
Query: 293 CGACGKRLSSRGALRRHAHVHTVERPHACSVCGRTFAQRSVLQRH-KLVHLGLSRHML-- 349
C CGKR + RG R H + C VCG F + L+ H + G + H++
Sbjct: 281 CRRCGKRFAVRGDWR--THEKNCGKLWFC-VCGSDFKHKRSLKDHVRSFGGGHAPHIVES 337
Query: 350 --THSGRVYECGGCGRQFND 367
T +G CGG G +D
Sbjct: 338 SSTGAGGGGGCGGAGADDDD 357
>03_04_0188 - 18241815-18242477
Length = 220
Score = 30.3 bits (65), Expect = 2.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 318 PHACSVCGRTFAQRSVLQRHKLVH 341
PH C++C R+FA L HK H
Sbjct: 134 PHRCTICRRSFATGQALGGHKRCH 157
>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
Length = 533
Score = 29.9 bits (64), Expect = 3.6
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 12/83 (14%)
Query: 304 GALRRHAHVHTVERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSGRVYECGGCGR 363
G + H+ R ACS C + +A VH H+ T R + C CGR
Sbjct: 128 GIKKHFRRKHSGHRQWACSRCSKAYA----------VHSDYKAHLKTCGTRGHTC-DCGR 176
Query: 364 QFNDKSSLLRHLKTASHRDQPAA 386
F+ S + H + A + +P A
Sbjct: 177 VFSRVESFIEH-QDACNAGRPRA 198
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 29.9 bits (64), Expect = 3.6
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 285 QSKGQGAWCGACGKRLSSRGALRRHAHVHTVERPHACSVC 324
+ + Q A CGA +RG + H V P CS+C
Sbjct: 135 RKRAQNAICGAITPTSMARGPITLDGHDFDVRAPRKCSLC 174
>01_06_1284 + 35994595-35995074
Length = 159
Score = 29.9 bits (64), Expect = 3.6
Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 14/86 (16%)
Query: 314 TVERPHACSVCGRTFAQRSVLQRHKLVHLGLSRHMLTHSG------------RVYECGGC 361
T E C C + F L H+ H L +L+ RV+EC C
Sbjct: 30 TTEGVFECKTCSKRFPSFQALGGHRTSHTRLQAKLLSDPAAAAAAAAERDRARVHECAVC 89
Query: 362 GRQFNDKSSLLRHLKTASHRDQPAAT 387
G +F+ +L H++ HR + T
Sbjct: 90 GVEFSMGQALGGHMR--RHRGETGTT 113
>11_02_0035 -
7597926-7598105,7598255-7598418,7598673-7598735,
7598839-7599130
Length = 232
Score = 29.5 bits (63), Expect = 4.8
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 154 EVNSDA-TMNEQSIFQDGKRFGET----DDVLQEARNTEITPDISSFLSTL 199
E +SD+ T + I GET DD+ ARNT +TPDI +++S +
Sbjct: 98 ETSSDSRTESMTDIPSSSDNSGETTRSFDDLCFCARNTAVTPDIKNYISII 148
>08_02_0250 +
14772746-14773037,14773141-14773203,14773458-14773621,
14774126-14774220,14774517-14774728,14774972-14775009,
14775131-14775424,14775510-14775617
Length = 421
Score = 29.5 bits (63), Expect = 4.8
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 154 EVNSDA-TMNEQSIFQDGKRFGET----DDVLQEARNTEITPDISSFLSTL 199
E +SD+ T + I GET DD+ ARNT +TPDI +++S +
Sbjct: 98 ETSSDSRTESMTDIPSSSDNSGETTRSFDDLCFCARNTAVTPDIKNYISII 148
>04_04_1176 + 31494318-31495685
Length = 455
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 257 EENTNVITSTDTANVSQPLNQKLPSSENQSKGQGAWCGACGKRLSSRGALR 307
++ TNV+ D N + + + LP + S G G ACG RL G R
Sbjct: 361 DQATNVVKKYDKGNNTWNIVKPLPVRADSSNGWGLAFKACGDRLLVIGGHR 411
>11_08_0066 - 28131521-28132012
Length = 163
Score = 29.1 bits (62), Expect = 6.3
Identities = 21/61 (34%), Positives = 22/61 (36%), Gaps = 12/61 (19%)
Query: 293 CGACGKRLSSRGALRRHAHVH-----TVERP-------HACSVCGRTFAQRSVLQRHKLV 340
C CG+R S AL H H RP HAC VCG F L H
Sbjct: 73 CRTCGRRFPSHQALGGHRTSHLRPTTNKRRPGPSKPLIHACEVCGLGFQMGQALGGHMRR 132
Query: 341 H 341
H
Sbjct: 133 H 133
>04_04_0157 + 23165638-23166633
Length = 331
Score = 29.1 bits (62), Expect = 6.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 319 HACSVCGRTFAQRSVLQRH 337
H C VCGR F R L RH
Sbjct: 104 HLCRVCGRRFRARDTLLRH 122
>10_08_0352 + 17091637-17091945,17092049-17096617,17096975-17097187,
17097266-17097494,17097857-17097981
Length = 1814
Score = 28.7 bits (61), Expect = 8.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 175 ETDDVLQEARNTEITPDISSFLSTLLVQVGVLSQQDDM 212
+ DD E+RN + +I F S+ LV+ G +D++
Sbjct: 1061 KVDDASIESRNVDRDAEIDGFFSSKLVETGTARSEDNV 1098
>08_02_0100 + 12350498-12350538,12351216-12351717
Length = 180
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 321 CSVCGRTFAQRSVLQRHKLVH 341
CSVCGR+F+ L HK H
Sbjct: 124 CSVCGRSFSSYQALGGHKTSH 144
>07_03_1094 +
23919878-23920520,23921297-23921363,23921364-23921453,
23922220-23922284,23922372-23922470,23922851-23922992,
23923100-23923139
Length = 381
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 319 HACSVCGRTFAQRSVLQRHKLVH 341
H CS+C RTF L HK +H
Sbjct: 137 HRCSICLRTFPSGQALGGHKRLH 159
>02_03_0144 + 15694766-15694883,15694980-15697612
Length = 916
Score = 28.7 bits (61), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 355 VYECGGCGRQFNDKSSLLRHLKTASHRDQ 383
VY+CGGCG K+ + +T S D+
Sbjct: 28 VYQCGGCGAVLRAKNRFMSVTQTGSKPDE 56
>01_01_0205 + 1764034-1767601,1767934-1767944
Length = 1192
Score = 28.7 bits (61), Expect = 8.4
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 146 LQICNGVIEVNSDATMNEQSIFQDGKRF-GETDDVLQEARNTEITPDISSFLSTLLVQVG 204
L + + NSD + NE D F G++ + LQE+R + ++S+ L V
Sbjct: 161 LDLSKRYVNDNSDISFNESD---DEIIFTGDSYNHLQESRLMSLVENLSNLKELYLDHVD 217
Query: 205 VLSQQDDMYVFMDSSINNLQLSTGDG 230
+ + DD + S+ LQ+ + DG
Sbjct: 218 MSTNVDDWCKTLAQSVPRLQVLSLDG 243
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,992,547
Number of Sequences: 37544
Number of extensions: 374889
Number of successful extensions: 1139
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 61
length of query: 387
length of database: 14,793,348
effective HSP length: 83
effective length of query: 304
effective length of database: 11,677,196
effective search space: 3549867584
effective search space used: 3549867584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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